| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1648 |
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| Symbol | |
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| ID | 5455916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1781812 |
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| End bp | 1782621 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640877222 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001412924 |
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| Protein GI | 154252100 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.157293 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTCGGG TAAGTGGCAA GGTGGCGCTG ATAACAGGTG CCGCGAGCGG TATCGGGCGC
GGGGCGGCTC TGGCTCTCGC GGCGGAAGGC GCCAAGGTCG TCGTGACGGA TGTGGACGAG
GCGGGCGCGA AGGAAACGGC CGCGCTTGTG GTCAAGGCGG GAGGTGCTGC TTCGGCCCAC
AAGCAGGATG TGACGGATGA GGGGCGCTGG CAGGAGGTCG TGGCAGCGGC GAAGTCGGAG
TTCGGCGGAC TTCATATTCT GGTCAACAAT GCAGGCATTG CGGTTGGCGC CTCGATTTTC
GAGATGACTC ATGCCGAGTG GTCGCGCCAG CAGGCGATCA ACGTGGATGG CGTCTTCTTC
GGCGTAAAGC ACGCTATCCC GCTTATTGCG GCTTCGGGCG GTGGCTCCGT CATAAACATT
TCTTCGGTCG CCGGCCTTCA GGGCGCACCC GGTCTTGCAG GTTATTGCGC GACAAAGGGG
GCCGTCCGTC TTTTCACCAA GGCGGTGGCG CTTGAATGCG CGCAGGCGCA GATGAATGTG
CGGGTGAACT CGGTCCATCC CGGCATCATC GACACAGCGA TCTGGCAGAA GATGACGCCG
GGCGGAACAT CATCCGTCTC CTCCAGCGTT CTGCCGATTG CCGAAGGCGC CAATTCCATT
GATCCGAACG CCATCGCCGT GGCGACGCCG CTCGGCTATG CGGGTCTGCC GGCGGATATT
GCGGCGGGTA TCGTTTTCCT TGCTTCGGAC GAATCGCGTT ACATGACCGG CACCGAACTC
GTCATCGATG GCGGCATGAC GGCGCGTTGA
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| Protein sequence | MGRVSGKVAL ITGAASGIGR GAALALAAEG AKVVVTDVDE AGAKETAALV VKAGGAASAH
KQDVTDEGRW QEVVAAAKSE FGGLHILVNN AGIAVGASIF EMTHAEWSRQ QAINVDGVFF
GVKHAIPLIA ASGGGSVINI SSVAGLQGAP GLAGYCATKG AVRLFTKAVA LECAQAQMNV
RVNSVHPGII DTAIWQKMTP GGTSSVSSSV LPIAEGANSI DPNAIAVATP LGYAGLPADI
AAGIVFLASD ESRYMTGTEL VIDGGMTAR
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