Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1350 |
Symbol | |
ID | 5454336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 1481124 |
End bp | 1481837 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640876921 |
Product | uroporphyrinogen III synthase HEM4 |
Protein accession | YP_001412627 |
Protein GI | 154251803 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1587] Uroporphyrinogen-III synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 0.0706582 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGCTTC TCGTCACCAG ACCGGAAGCC GACAGCGAAG CGCTTGCCGA AACTCTGGCG GCGCTCGGCC ATGAAGCGGT GCAAGCGCCT CTTCTCACGA TCCGCTTTTT CGACGATGCA ACCCTGCCGG CGGGAGACTG GCAGGCGCTT CTTGTCACAT CGGCAAATGG CGCCCGCGCG CTTGGCCGCC GGGAAATCGC ACGAGAGCTC AAAAGCCTGC CGGTCCTGGC TGTCGGCCCC TCAAGTGCCG CGGCGCTCCG GCGGGAAGGG TTTGTCTCGG TTAAGGCCGC TGGAGGAGAT GTCGAGGCGC TGGCCGCTCT CGCGGTGGCG GAGCTGAAGC CGGAGGCCGG ACCGCTTCTC CACATCGCGG GCAGCGTGGT CGCGGGCGAT CTGGGTTCGG CGCTTGGCGC CCATGGTTTC ACGGTCGAAC GGGCGGTGTT TTACGAGGCG GAGCTGGCGC AACAGTTGCC GGAGACGGCG CGGCGCGCGC TGGAAGACCA CACGCTCGAG GGCGTTCTTT TCTATTCTCC CCGAACGGCA CGGGCTTTCA CGTCGCTGGT GATGGCGGCG GGTCTGAAGG ACTGTCTCAC GGGCGTCACG GCCTATTGTC TCTCGCGAGC GGTCGCCGAT GAATTGCGGG AACTGCCCTT TGGCGGTGTG AAGATTGCGG CCAGGCCCGA GCAGCCGGCA TTGCTTGCGC TCATTTCCGC CTGA
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Protein sequence | MKLLVTRPEA DSEALAETLA ALGHEAVQAP LLTIRFFDDA TLPAGDWQAL LVTSANGARA LGRREIAREL KSLPVLAVGP SSAAALRREG FVSVKAAGGD VEALAALAVA ELKPEAGPLL HIAGSVVAGD LGSALGAHGF TVERAVFYEA ELAQQLPETA RRALEDHTLE GVLFYSPRTA RAFTSLVMAA GLKDCLTGVT AYCLSRAVAD ELRELPFGGV KIAARPEQPA LLALISA
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