| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1079 |
|---|
| Symbol | |
|---|
| ID | 5453970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1183661 |
|---|
| End bp | 1184308 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640876649 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001412358 |
|---|
| Protein GI | 154251534 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTTCGG GATCAACGAA AAAGCGTGTC AGAAAGCCGG TTCAGCGCCG CTCCGAAGCG
ACTGTCGATA CGATCCTCGA GGCGGCTGCT CAGATTTTCC GGACGCACGG AGCGACGGGA
GCAACAACGA ACCGGATTGC GGAGCGCGCG GGCGTTTCCA TCGGATCGCT CTATCAGTAT
TTTCCAAACA AGGAGTCGTT ACTTGTTGCA TTGATGGAGC GGCATATAGG CTCGTCGCTC
GCCCTGTTGG GCGATGTCCT TCAGGCAAAG GAGGGCGCCA CGCCGAAGGA ATGCGTTCAC
GCCGCAGTCA ATTGCGTTCT CGATATCCAC ATGGAAGATC CGGAACTTCA CCGCGTTATT
TTCGAGGAAG CTCCGAGACC GCCTCATGTT TACAAAAAAT TTGAGGAAGG CGAGCGGCTG
ATGCGCGGCG CGCTGGAGAG AATGCTCGGT ACTTTTCCGC GCTCGACATG CCGCGATCCG
AAGCGCAGCG CCTATATGTC GCTGGCGATG GTCGAGAGCA TGGTGCATCG CTATGTGACC
GCGCGGGACA AGCCAATGCT CCCTCAGGCC TTCGCCGCAC ATCTGACGGA AGTGGTGATG
CGCGAGATGG CGCTCAGCTC ACCGCCTTCA GCAGGTTCCG CGCGATAA
|
|---|
| Protein sequence | MASGSTKKRV RKPVQRRSEA TVDTILEAAA QIFRTHGATG ATTNRIAERA GVSIGSLYQY
FPNKESLLVA LMERHIGSSL ALLGDVLQAK EGATPKECVH AAVNCVLDIH MEDPELHRVI
FEEAPRPPHV YKKFEEGERL MRGALERMLG TFPRSTCRDP KRSAYMSLAM VESMVHRYVT
ARDKPMLPQA FAAHLTEVVM REMALSSPPS AGSAR
|
|---|
| |