Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0651 |
Symbol | |
ID | 5456530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 715173 |
End bp | 715829 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640876220 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001411931 |
Protein GI | 154251107 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0025795 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 0.249536 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGGCCTACA GGCAGACTGA CAAGGTGGCG GCACGGCTGG CGGACACCCG GCGCAGCATC CTCGATGCAG CGCGGATGCT TGTGGCCGAT GGCGGCTTTG CGGCCGTTCA GATGACCGAG ATTGCAAAAA GAGCCGGCGT CGCAACAGGC ACGCTTTACC GCTATTTCTC CTCCAAGGAA GAACTTTGCC GACAGGTATT TCGCGAAGTG TCCGCGCGGG AGATGGACAT GCTCGCGACA ATCGCTTCGG GGAACGAACC TGCGCGCGAG AGGCTGGCCG AGGTGCTGCG CACATTCGCC AGCCGCGCCG TTCGGGGCCG GCGCCTGGCC TATGTCCTGC TCGCCGAGCC TGTGGATGTG AACCTTGCCG AGGAGCGCGC CTTCTTCCGT CGCACCCATG CCGAGATCTT CGCCGGCATT CTCGAGGACG GCATTGAGAC CGGCGAATTT CCAAAGACCA ATGCGCGGAT TGCGGCCGCC TGCATCGCAG GCGCCATACC CACGGCGTTG ATCGGTCCCC TCGCACCGGA ATCGCACGAG CTCGACAGCG CGCCCGAGCG CGTGGTGGAA GAGATCGTCA GTTTCTGCAT GGCAGGTGCC GGCGTGACGG CGCCACGAAA ATCGAACCAG ACGAAAGAAC GGAGAGCATC GCTATGA
|
Protein sequence | MAYRQTDKVA ARLADTRRSI LDAARMLVAD GGFAAVQMTE IAKRAGVATG TLYRYFSSKE ELCRQVFREV SAREMDMLAT IASGNEPARE RLAEVLRTFA SRAVRGRRLA YVLLAEPVDV NLAEERAFFR RTHAEIFAGI LEDGIETGEF PKTNARIAAA CIAGAIPTAL IGPLAPESHE LDSAPERVVE EIVSFCMAGA GVTAPRKSNQ TKERRASL
|
| |