Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0237 |
Symbol | |
ID | 5456393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 256340 |
End bp | 257326 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640875800 |
Product | type II secretion system protein |
Protein accession | YP_001411517 |
Protein GI | 154250693 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.383042 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCAGT CCACACTAAT GATCGCTGGA ATTGCCGTTC TTGCCGCCCT CTGCATAGGC GCCATCGGAT TTCTGTTTGT AGGCGGTGAA TCCCGCTCAC AGAAAAGGGT GGCCCGCGTC ACGCGCGCAG GAAATGCACG CCTAGTTGCT GTCGATGGTG AAGTCGACAA TAGCGAAAAG CGCCGCAAGC AAATGCAGGA AACGCTCAAG GGGCTTGAGG AAAAGCAGCA GGAGCACAAG AAGCGCGTTT CATTGAACAC CCGCATCGAG CGAGCGGGAC TCGAGATGAC AACACGAAAT TTCTATATTG CGAGCATCGT CACCGGCATC GCCTTTTTTC TTGTCTTCAA GCTTGTAGGG CTGTCGCTCC TGGTTTCGGC CTTGAGCGGT TTCGCCGGCG GCTTCGGCTT CCCGCGATGG GTATTGTCGT ACCTTATCAA GCGCCGTCAG AAGGCGTTTA CCGAAGAATT CGCGAATGCT ATCGACGTCA TCGTGCGCGG CGTCAAATCC GGCTTACCGG TCAATGATTG TCTGAAGCTC ATCGCCACGG AATCACCAGA GCCCGTACGG ACCGAGTTTC AGGGAATTGT AGAAGGCCAG CGTGTTGGCG TCACCCTGGA GCAGGGTCTC GCCAAGATCT ACGAGCGAAT GCCATTGCCG GAAGTGAATT TCTTTCAGAT CGTGCTCGCC ATTCAGCAGA AGACTGGCGG CAATCTGTCC GAAGCGTTGG GAAATCTCTC AAAAGTTCTT CGTGAGCGCA AAAAAATGCG TGGGAAAATC CAGGCGATGT CTCAGGAAGC TAAGGCATCG GCAGGCATTA TCGGGTCGCT TCCGCCCGGC GTCATGCTGC TTATCTACTT CAGCTCGCCG GGCTACATGG ACGTACTTTT TTCGACCACG GCCGGCAACA TGATCATCGT CGGCGGCATC ATGTGGATGG CTATCGGCGT TCTCGTCATG AAGAAGATGA TCGACTTCAA GTTTTAG
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Protein sequence | MDQSTLMIAG IAVLAALCIG AIGFLFVGGE SRSQKRVARV TRAGNARLVA VDGEVDNSEK RRKQMQETLK GLEEKQQEHK KRVSLNTRIE RAGLEMTTRN FYIASIVTGI AFFLVFKLVG LSLLVSALSG FAGGFGFPRW VLSYLIKRRQ KAFTEEFANA IDVIVRGVKS GLPVNDCLKL IATESPEPVR TEFQGIVEGQ RVGVTLEQGL AKIYERMPLP EVNFFQIVLA IQQKTGGNLS EALGNLSKVL RERKKMRGKI QAMSQEAKAS AGIIGSLPPG VMLLIYFSSP GYMDVLFSTT AGNMIIVGGI MWMAIGVLVM KKMIDFKF
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