| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0197 |
|---|
| Symbol | |
|---|
| ID | 5453834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 221783 |
|---|
| End bp | 222748 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640875759 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001411477 |
|---|
| Protein GI | 154250653 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCGGTGG CGGGCACGAT CACGGTATTC GGCGGTTCGG GCTTTGTGGG CCGTCATATC
GTGCAGACGC TGGCGAAGCG CGGCTACCGC ATCCGCGTCG CCGTGCGCCG CCCGAACGAA
GCCCTGTTCC TGCGCCCGAT GGGCGTGGTC GGGCAGGTGG AGCCCATCCA GGCCAATATT
CGCGACGACG CCTCGGTGCG CGCCGCCGTG GCGGGCGCCG ACGCCGTGGT GAACCTTGTC
GGCATTCTCC ACGAAACCGG CAAGCAGACA TTCGACGCCG TGCAGGCGGA AGGCGCGGGC
CGCGTTGCGC GCGCGGCGGC GGAAGCAGGC TGCGGCCGCC TGATCCATAT TTCGGCCATC
GGCGCGGACG AGGAAAGCGC CTCGCATTAC GGGCGCACCA AGGCGCTGGG CGAGAAGGCG
GTGCGGGACG CGATGCCGGA TGCGGCGATC GTGCGGCCCT CGATCGTGTT CGGGCCGGGG
GACAGCTTCT TCAACCGTTT CGCGGCGCTG GCGCGGCTCT TTCCCGCGCT GCCGCTGATC
GGCGGCGGCA CGATGCGGCT GCAACCCGTT TACGTGAAGG ATGTCGCCGA AGGCGTCGTG
CAAATTCTCG AAGGCGAGGG GCTTTCCGGC CGCGTCTATG AATTCGGCGG GCCGGAAGTG
CTGACCTTCC GTGAACTGAT GGAATTGACA CGGCGCGAAA TCGGCCGCAG GACGCTGCTG
CTGCCGATGC CGGTATGGGT CGCGAAGCTG ATGGCCATGT TCACGCAGTT CATTCCCAAC
CCGCCGCTGA CGCCCGACCA GGTGCGCCTT CTCACCATCG ACAATGTGGT GAGCGAGGAG
GCGAAGGCGG AAGGCCGGAC GCTGCAGGGC CTCGGCCTCG CGCCGACAGC CGCCGAAGTC
GTGCTGCCCA CTTATCTCTA CAGGTTCCGC CGGACGGGAC AGTTCGAGAA CGCCAACGCG
AGTTGA
|
|---|
| Protein sequence | MPVAGTITVF GGSGFVGRHI VQTLAKRGYR IRVAVRRPNE ALFLRPMGVV GQVEPIQANI
RDDASVRAAV AGADAVVNLV GILHETGKQT FDAVQAEGAG RVARAAAEAG CGRLIHISAI
GADEESASHY GRTKALGEKA VRDAMPDAAI VRPSIVFGPG DSFFNRFAAL ARLFPALPLI
GGGTMRLQPV YVKDVAEGVV QILEGEGLSG RVYEFGGPEV LTFRELMELT RREIGRRTLL
LPMPVWVAKL MAMFTQFIPN PPLTPDQVRL LTIDNVVSEE AKAEGRTLQG LGLAPTAAEV
VLPTYLYRFR RTGQFENANA S
|
|---|
| |