| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3333 |
|---|
| Symbol | |
|---|
| ID | 4625747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 4118237 |
|---|
| End bp | 4119943 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639798443 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_944619 |
|---|
| Protein GI | 119946939 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.901115 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTATTA ATCGTTCCAT CTCAATACGT CCGGTCACTA CTACTGCATT GGTAATGTTA
CCTCTAAGTC TGATGATTGC CTATTTATTG CTCAGTATGG GATCTGCTTT CTCAGAAGAG
CTGATTTATC TTAAACAGAG TATGGCTAAG ACGGCAGAAC TGCAGGCGGT GTTATGGTCG
CTGTTGGCAG GTGGTCTGGT TCTGACCATG TTTAATCTGT ATCACCCGGC AGCTCGGTTT
TGGCTGGAAC GAATGCCTGC TGCGGGCATA AGTATGGTGC TGGGCACCGC GCTACTGACT
TTCCTTTGGT TATATATAGA CCCGATTTAC AATACCAACG CCACACCTGG TGCTTTACCA
GAGTTGCTGG CTGCTGGGGT TACGGCAATC TTGATTGCTG CACTGATTTG TATCGAAGTC
TCCTTTGTAT TGCTCTCCAG ACTCACTGCC CGGGCCAAGA CGACTGAGCT GAAAAAAGAA
GCTGTAGACT ACCGGCTGAT GCGGCCGGCG ATCTTTGTCT TTCTGTTCGG AATCGATCTG
TCGATGGCTT TTATTCCGCT GTATATGGGT AAAATGGAAC AAGATTTCTT TGGGCTATCA
CAAAATATAA TGATGGGGCT GCCCATTTCT GTTGAATTTT TTTGTGTTGG TGTGGCGATT
CTGCTGGCGG GTGTCTGGTT TGACCGGCGC GGCTGGCAGG AGCCTTTCTA TGCGGGACTG
GCACTGGCAA CGCTCGGTGC GCTGTATTCC TGGATGGCTC CCGATGCCCT GCATTTCATC
CTTTCCCGAG GGCTGGTTGG TCTTGGTTAC GGCTTGGTAC AACTATCTTC TCACGGCTTC
GTTATTCGTA ATACGGATAA ATCCACTAAG GCTCAGGGAA TGTCTCATTT GGCTGCCGGT
CTCTATGCTG GCAGTCTTTG TGGTGCTGCC ACTGGTGCGG TGATGGCTGA GCAGTTCGGC
TACGAGGTGG TATTCCTCAG CGGTGCGGTG ATTATTACCT CAGTAGTCGT ATATAGTCTG
CTGATTTTGG GGTATCCCGC CAAAACGCCA AGCAAAACTA AAAGCGTGCC GCTGCAACAT
GTGGGTAAGT CAGTCTTGCG CCGTTTCTTG CTCGACAAGC GGGTGCTGGC TGCCATCTTT
TTCAGCAGCA TGCCAGCGTC TATTGCCGTG GTTGGTTTTC TTAACTATTT CAGTCCGGTC
TATCTTAATC GGCAAGGTAT CTCGGAATCC ACTATAGGTC AGGTGCTGAT GCTGTTTGGT
ATCTGCATCG CTGTGCTTGC GCCAAGGGTT GGGCGGCTAA TAGATGCGAC CGAAAATAAA
CAACAGCTGG TGCTGATTGG TAGCTTGCTG GGGGCTAGCG CATTCCTTAC TTTTAGTATC
TGGGACGGGC TGCTGGCGAC AACCATTGCC ATTTTTTTGT TGGGGTTGTC CAACTGTCTG
GTACTCTCAG CGCAGAGCGT ATTTCTGCTG AAACTCGATA TCACTCAAGA GCTCGGTGAA
GGCAAGGCAA TGGGTATATT TCGTGCCTCC AGCCGTATCG GCCAAATGCT TGGGCCGATC
ATTTTCGCCT GGCTGTTTCT ATTTGAGGAT GTGAGTATTG GCATCACTTA TCTAGGGCTG
GCATACATTG TTATGTCCCT TATTTTTATC TGGTTGACAC GTAGTGATGC CGATCAACTA
AAAAAAATAC AGGAAGGAAC TTCGTAG
|
|---|
| Protein sequence | MVINRSISIR PVTTTALVML PLSLMIAYLL LSMGSAFSEE LIYLKQSMAK TAELQAVLWS
LLAGGLVLTM FNLYHPAARF WLERMPAAGI SMVLGTALLT FLWLYIDPIY NTNATPGALP
ELLAAGVTAI LIAALICIEV SFVLLSRLTA RAKTTELKKE AVDYRLMRPA IFVFLFGIDL
SMAFIPLYMG KMEQDFFGLS QNIMMGLPIS VEFFCVGVAI LLAGVWFDRR GWQEPFYAGL
ALATLGALYS WMAPDALHFI LSRGLVGLGY GLVQLSSHGF VIRNTDKSTK AQGMSHLAAG
LYAGSLCGAA TGAVMAEQFG YEVVFLSGAV IITSVVVYSL LILGYPAKTP SKTKSVPLQH
VGKSVLRRFL LDKRVLAAIF FSSMPASIAV VGFLNYFSPV YLNRQGISES TIGQVLMLFG
ICIAVLAPRV GRLIDATENK QQLVLIGSLL GASAFLTFSI WDGLLATTIA IFLLGLSNCL
VLSAQSVFLL KLDITQELGE GKAMGIFRAS SRIGQMLGPI IFAWLFLFED VSIGITYLGL
AYIVMSLIFI WLTRSDADQL KKIQEGTS
|
|---|
| |