| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2880 |
|---|
| Symbol | |
|---|
| ID | 4626216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 3560859 |
|---|
| End bp | 3561965 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 639798000 |
|---|
| Product | periplasmic serine protease DegS |
|---|
| Protein accession | YP_944183 |
|---|
| Protein GI | 119946503 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0120636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTTA AAACGCGCTT GCTGTATTTT TTAAAACCCA TTTTTTGGGG GATTATTATT
GCGATATTAA TCGTTTATGG CGCACGGTTA GGGACAGTTT TAACATCGCT TTTAGCCAAC
GATAAAGTCG CAAGTTATAG CGAATCAGTC AAAAAAGCAT CCCCTGCAGT GGTTAATATT
TACTCTCAAC AATATGTAGA CTCGACTTTC AACAACAACA AACAACAGCT TCAACCGACG
GGGTTAGGAT CCGGCATTAT TGTTGATAAA AAAGGTTACA TTTTAACCAA CTACCATGTT
ATTAAACAGG CTGATCAGAT ACTTATCGCT TTACAGGACG GCCGTCTCTT TACCGCCACT
GTGGTCGGGA GTGATGTAAT AACCGACTTA GCGGTACTGC AAATTGAGGG CAATAACCTG
CCGGTGATCC CTCAGAACAG TCAATATAAT CCTCAAGTTG GCGATATAGT ACTCGCTATT
GGTAATCCCT ATAACTTAGG GCAAACCATC ACTCAGGGTG TTATCAGTGC CACCGGACGC
AGTGGTATGA GTTCATCTGG CCGTCAGGAT TTCCTGCAGA CAGATGCGGC TATTAACGAA
GGAAACTCAG GGGGAGCATT AATTAATAGC CGAGGTGAGT TAGTTGGTAT TAATACCTCT
GAATTTTACA GTCGTCGTCA AAATATTAGT TATGGTATTA GTTTTGCTAT TCCCTATCAG
CTTTCGCAGC GGATAATGAA CAGCCTAATT AGAGATGGTC GCGTTATTCG TGGCTCCTTA
GGTATAGTGG CCGAAAATTT AGATCCGCTT TTAGCGCGTC TTTGGGGCTT AAAAGCACAA
AACAGCACCA TCATAAAAGA AGTTCAGGAA GGAGGACCTG CTAGTATTGC GGGGGTTGAA
GTCAATGATA TTTTACTAAA AATCAATAAT ACGGCTGTTG AAAACTTAAT TTTTGCGATG
GATATGGTGG CAGAAATACC GCCAGGCACA AAGGCCGTAT TAACGGTATT ACGTAAAGGA
GAGGAAATGG ATATCGACGT CATTATTGGC GAGCTGAGTA ATCCCCCTCA AAATACAAAT
AGCACTGACA AAGAAATTAA CCCTTAA
|
|---|
| Protein sequence | MNFKTRLLYF LKPIFWGIII AILIVYGARL GTVLTSLLAN DKVASYSESV KKASPAVVNI
YSQQYVDSTF NNNKQQLQPT GLGSGIIVDK KGYILTNYHV IKQADQILIA LQDGRLFTAT
VVGSDVITDL AVLQIEGNNL PVIPQNSQYN PQVGDIVLAI GNPYNLGQTI TQGVISATGR
SGMSSSGRQD FLQTDAAINE GNSGGALINS RGELVGINTS EFYSRRQNIS YGISFAIPYQ
LSQRIMNSLI RDGRVIRGSL GIVAENLDPL LARLWGLKAQ NSTIIKEVQE GGPASIAGVE
VNDILLKINN TAVENLIFAM DMVAEIPPGT KAVLTVLRKG EEMDIDVIIG ELSNPPQNTN
STDKEINP
|
|---|
| |