Gene Ping_1948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1948 
Symbol 
ID4626989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp2369774 
End bp2370421 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content41% 
IMG OID639797114 
Producthypothetical protein 
Protein accessionYP_943316 
Protein GI119945636 
COG category[R] General function prediction only 
COG ID[COG1853] Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00544645 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0118846 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAACC GTTACCGCGC CCAGTTTATA AACAGCTTGT CCGGTTTTAA GAGCGTTAAC 
CTTATTGGCA CGCAGGATTC CAACGGACAA ACTAATCTTG CGATATTTAG CTCAGTTGTA
CACTTAGGCG CGTCACCTGC ATTGGTTGCT TTTGTTATGC GGCCGGATAA CGGATCAAGA
CATACTCTTG ATAACATTAT CAGCACAGAG CATTACACTA TAAATCAAGT ATCAGCTCAA
TTTTATCAGG CAGCTCACCA AAGCTCTGCT TGCTATCCAA AAGAGGAAAG CGAATTTACC
CGCTTAGACT TATCAGAAAG TTATATTAGC GATATTAATG CCCCCTTTGT TAAAGAAAGT
CGCTTGAAGT ATGCGGTTAA GTTAAAAGAA ATCCTGCCAG TCTCGAGTAA TAACACCCAG
TTTATTATTG GGGAAATCAC CCATGTCATT TGCGATGAGA GTGCTCTAAA AGACGATGGT
TATATCGATA TAGAAGCCTT AGAAACTGTG ACTGTCTCCG GGTTAGACAG TTATCATATA
AGCGTACGAC TGGCTCGTTT AAGTTATGCA AAACCTGACA AGTCCTCAAC TGAGATTTCA
TTAAATGGCT CAGAAAATGT TAGTGCTGAC GCCAGGGGTA AAAGCTAA
 
Protein sequence
MDNRYRAQFI NSLSGFKSVN LIGTQDSNGQ TNLAIFSSVV HLGASPALVA FVMRPDNGSR 
HTLDNIISTE HYTINQVSAQ FYQAAHQSSA CYPKEESEFT RLDLSESYIS DINAPFVKES
RLKYAVKLKE ILPVSSNNTQ FIIGEITHVI CDESALKDDG YIDIEALETV TVSGLDSYHI
SVRLARLSYA KPDKSSTEIS LNGSENVSAD ARGKS