Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_4044 |
Symbol | |
ID | 8255178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4887408 |
End bp | 4888949 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644937708 |
Product | Rhomboid family protein |
Protein accession | YP_003094297 |
Protein GI | 255533925 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.887377 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATTTC AGTGGGGCTA TTCTCCAAAA ATTGAAAAAT ACATCCCATT GGGTAATTTT CCGGCCGACA GGTACCTGGT TATTGCACAA CAGGCGATAG AGAACCTGGG CTGGAAACTA AGCCATTTGT CGGAATCGGG GATTATTGCC TATACAGGTC TTTCGGCACA ATCGTACAGT GAAGAGATTT CTATCCGTAT CATTGCTAAT TTTGCTGTTT TTAAAAGCGA ATGTATCGGC ATTCAGCTGC TGTTTACCGA TTATGGAAAG AACCAGGAGA ACCTTGACCG GTTTTTTCAT GAATTTGAAT ATGTGGAGTA CCACCTGGCC GCGGTTTGGG AGGACAGGCT GAAGGATTTT CATGATCATA TTGCTAAGCA GGACGACAGC TATTTTAACC GGGCACCTTT AAAAGCAAAA GATAAGATTA AAAATATATT TTACCTGTTC ATTCCGCAGA AGGGTTATCT GGTTACCCCC ATTATTGTAA CCCTGAACAT TTTGCTGTGG CTGGGCAGGC TGGCCATAGT GCTGCTGCTG TCGAACCTTT TTAAGGCGCA GCTGGGGGGG CAGGGTTTAC TTACGCCAGA ACTTTTATTG AAGATACAGT CTTATTTCGG GATAAACAGC AGGGACCTGA CCCTGAGTGG GCAATGGTGG CGATTGCTGA GCAGTCAGTT TTACCATTTC TCGCTGCTGC ACCTGTTTTT CAATATGTAT GCGCTGATCT ATATCGGGCT GATGACAGAG AACAAGCTGG GCTGGGCAAA AACACTGATA GTTTATATTT TAAGTGGAAC ATGTGGGGCT TTGCTAAGTG TTTACGGGCA TAAGATCGGA TTTATGGGTG GGGCTTCGGG GGCCATTATG GGCATGTTTG GTGCTTTTCT GGCGCTGCTG CTGAGCAATG CTTTTGAAAA GACCGCTGCC AGGGCCTTAC TGATCAGTAC GGTAATTGTG GTAGCATACA TGCTACTGAA TGGCCTGCTG AGTGAGACTG CCGACAATTC GGCGCATCTG GGCGGATTGG TTTCAGGCTT CCTTATTGGT TATCTTCTAT ATAATGAACG TTTGCTGGGC CAGCCTGTGC CGCTGTTGTA CAGGGCTTCG GCTTCGGGTT TTATGGTGCT GGCCTTTGCT GCACTCATTT ATCAGTTTTC GCCCCGATAC CAGGTAGAGG AATATGCAAA ACTAAGGGAT GCCTTTAATT TAAATGACGA AAGGTTTAAC CAGATCTATT ACATCAGCAG TGATTTGCCT TTGGAAGAAA AACTGAGGAG GGTGAAGCTG AACGGGATAG ATGTTTGGGC CGAGAACCTG AAGATCACCA GGGAAATGGA CAAGCTGATC GTATTGGAAA TGGATGGGAT AGACCGGGAT TACCGTAAGG TAATTGCGGA AAAAGCCTAT GCGGTGTCGA TGCTGATGTA TAAAGACTAT GAGTCGGGTA CACGGGAAAA CAGGGCAGTT ATCCAGGAAA AGATCAATGA GGTGATGCGG CTGAAGGCGA AACTGAGAGA ACGCCTGACG GAGCCTGAAT AA
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Protein sequence | MAFQWGYSPK IEKYIPLGNF PADRYLVIAQ QAIENLGWKL SHLSESGIIA YTGLSAQSYS EEISIRIIAN FAVFKSECIG IQLLFTDYGK NQENLDRFFH EFEYVEYHLA AVWEDRLKDF HDHIAKQDDS YFNRAPLKAK DKIKNIFYLF IPQKGYLVTP IIVTLNILLW LGRLAIVLLL SNLFKAQLGG QGLLTPELLL KIQSYFGINS RDLTLSGQWW RLLSSQFYHF SLLHLFFNMY ALIYIGLMTE NKLGWAKTLI VYILSGTCGA LLSVYGHKIG FMGGASGAIM GMFGAFLALL LSNAFEKTAA RALLISTVIV VAYMLLNGLL SETADNSAHL GGLVSGFLIG YLLYNERLLG QPVPLLYRAS ASGFMVLAFA ALIYQFSPRY QVEEYAKLRD AFNLNDERFN QIYYISSDLP LEEKLRRVKL NGIDVWAENL KITREMDKLI VLEMDGIDRD YRKVIAEKAY AVSMLMYKDY ESGTRENRAV IQEKINEVMR LKAKLRERLT EPE
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