Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3988 |
Symbol | |
ID | 8255122 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4812218 |
End bp | 4813654 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644937652 |
Product | RagB/SusD domain protein |
Protein accession | YP_003094241 |
Protein GI | 255533869 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAATT TAAACCTACT GATCAGACCA ATGGTGATGG GTCTGATCAT GCTGATAGCC GGATGTAAAG GATTTGTGGA GATTGATCCC CCTGTCGACC AGATTGTGAG TGAGACTGTA TTTACAAGTG ATGATATGGC TTCTTCTACC ATAAGGGGCA TATATGCGCG GATGATGATC GCAAATGGTT TCGCAAGCGG TTATGTTAGC AGTGTAACTT TATTGGCCGG GAAATCATCA GATGAATTTA TAAACTACAA TACCTCCAGT ATGATGGACG TCCAGTTTGC AAGCAATAAT TTATTGCCGG ATAATGGTAT TTTACGGACC GGATTATGGC AGGAGCCTTA TAAGTACATT TATTATGCAA ATGCTGTATT GGAGAACCTG CAAAAGTCTG ACCTGGTTTC TGCGGACATG AAAAGCCAGC TTGAAGGCGA AGCTTTGTTT ATCCGTGCAT TTTGCCATTT TTATCTGAGT AACCTTTTTG GTGAGGTGCC TGTTATTTTA ACCACGGATT ACAGAGTCAA TGCCATTGCC CGGGCAAGTT CCAAAACAGA GATCTATACC TGTATGGTTA AAGACCTGTT GAAGTCTAAA GCATTATTGC CCGAGAGTTA CCCGGCTGCT GAAAGAACAA GGCCGAACAA ATGGGCGGCG ACAGCCCTGC TGGCCAGGGT CTATTTATAC CAGGAAGACT GGGTAAATGC AGAAAAGCAA GCTACCGAGG TGATCCAAAA AACAAATCTG TACAAAATAC AGTCCGACCT GAACCAGGCA TTTCTAAAGA ATAGTGAAGA AGCGATCTTA CAGTTTGCTG CACCAGCCAG TACCGGGGTA AATACCAGAG AGGGCCAGCT TTTTATTTTA ACTGCTGCGC CGGGTGCCAG TACCGCTGTA ATATTGAGCA GCAATTTAAC CAGTTCCTTT GATCCGAATG ACCAGCGTGC ACAAAAATGG ATCGGAACCT TTACCAATGC AGCTGGCAGC TGGAAATATG CATTCAAATA CAAGGTTAAA ACAGGAGCTA CTGTGGTAAC GGAATATTCG ATGGTACTGC GCTTAGCCGA ACAATACCTC ATCAGGGCCG AAGCCCGTAT TAACCAGGGT AATGTGGAAA CTGGAGTCCA GGACCTGAAT GTTTTGCGCA AACGTGCCAG GCCCCTTCCC GGTGTTGCAG GCCCTAATCC ACTGCCTGAT ATTTTGCCGA CATTAAGTCA GACCGATGCG CTGCTTGCAG TAGAAAAGGA AAGAAAATAT GAGCTGTTTG CTGAATGGGG GCACCGCTGG TTAGACCTGA AAAGGACCCA TAAGGCTGAG TCGGTAATGG GCGCATTAAG AGGGAGTAAC TGGCAAAGTA CAGATGTATT TTATCCCATT CCAAAAACGG AACTGGCAAA CAACCCAAAC CTGGTGCAAA ACAAGGGATA CCAGTAA
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Protein sequence | MKNLNLLIRP MVMGLIMLIA GCKGFVEIDP PVDQIVSETV FTSDDMASST IRGIYARMMI ANGFASGYVS SVTLLAGKSS DEFINYNTSS MMDVQFASNN LLPDNGILRT GLWQEPYKYI YYANAVLENL QKSDLVSADM KSQLEGEALF IRAFCHFYLS NLFGEVPVIL TTDYRVNAIA RASSKTEIYT CMVKDLLKSK ALLPESYPAA ERTRPNKWAA TALLARVYLY QEDWVNAEKQ ATEVIQKTNL YKIQSDLNQA FLKNSEEAIL QFAAPASTGV NTREGQLFIL TAAPGASTAV ILSSNLTSSF DPNDQRAQKW IGTFTNAAGS WKYAFKYKVK TGATVVTEYS MVLRLAEQYL IRAEARINQG NVETGVQDLN VLRKRARPLP GVAGPNPLPD ILPTLSQTDA LLAVEKERKY ELFAEWGHRW LDLKRTHKAE SVMGALRGSN WQSTDVFYPI PKTELANNPN LVQNKGYQ
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