Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3657 |
Symbol | |
ID | 8254788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 4372510 |
End bp | 4373319 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644937318 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_003093910 |
Protein GI | 255533538 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGGTACT TCGTACACAT CGGTTACAAT GGCTTAAAAT ACAATGGCTG GCAAAAACAG CCTGGGGTGA TGAACGTGCA GGGTGTGATA GAAAATGCGC TTAGCAAGGT ATTAAAAACC CCTGTATTTA TCATCGGATG CGGGCGCACG GATGCGCATG TACATGCAAG CCAGTTTTTC TTCCATATGG ATGTGGAGCA GGACTGGGAT TTTGATCTTG TGTTCAGGAT GAACAAGCTG CTGCCTGCGG GAATTGCCAT TTTTGAGGTT ATCCAGATGG ATGGTTTGCA GCATGCCCGT TTTGATGCTG TATTGCGCTC GTACGATTAT TTTATCCATA CCTATAAAGA TCCCTTTTTA AATGGCCTCA GCTCATTTTA CCTGCTGGAT AAGCTGGACT TTGATAAAAT GAAACAGGCG GCGGCGATAT TACCGAAATA CAAAGATTTC AGGGCCTTCT GTACCAGTCC GGATAAATAT GAACATACCC TGTGCAATGT GATGTCGGCC AGTCTTGCTG TAGATGAAAA TGGCGACAAA CTCCGCTTCC AGATCTCTTC GAACCGTTTT TTGAGTAAAA TGATCCGGAT CATTATGGGA CAGCTGTTGA AGATTGGGCG TGGGGTATTG AGTGTGGATG AATTTGAACA TTACCTTATT TACAACCAAA CGCCCGAACT GATTACCCCG GCACATCCAC AAGGGCTGTA TTTATCTAAA GTTACCTACC CCTACCTGAA TTTGCCACCC CGGACTGAAT TTTCGTCTAT CCTGCAAAAG CAATCGGACT TATCCTGGCA GCTGCTATAA
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Protein sequence | MRYFVHIGYN GLKYNGWQKQ PGVMNVQGVI ENALSKVLKT PVFIIGCGRT DAHVHASQFF FHMDVEQDWD FDLVFRMNKL LPAGIAIFEV IQMDGLQHAR FDAVLRSYDY FIHTYKDPFL NGLSSFYLLD KLDFDKMKQA AAILPKYKDF RAFCTSPDKY EHTLCNVMSA SLAVDENGDK LRFQISSNRF LSKMIRIIMG QLLKIGRGVL SVDEFEHYLI YNQTPELITP AHPQGLYLSK VTYPYLNLPP RTEFSSILQK QSDLSWQLL
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