Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3590 |
Symbol | |
ID | 8254712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4276760 |
End bp | 4278652 |
Gene Length | 1893 bp |
Protein Length | 630 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644937242 |
Product | hypothetical protein |
Protein accession | YP_003093843 |
Protein GI | 255533471 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.116623 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGACAGA TGGGTAAGAA AATAAGAATA ACATTTGGGC TTGTGTTGTG CTTAACAAGT TGTTTTATGC ATTCCGTCCG TTGTGCGGAA AAGGTTCTGG TACTTAAAAG TCCCTCATCT TCTTTAACGG TTCGTGTTTT TAAGGGGGGG GATAAAGGGT TTTTTTATAC GCTTTCTTTG AAAAACAGGA CGCTAATACA TGCTTCTCAT CTAGGTTTAA GTATTGCAGG CAGGCCCTTT TTGAATCCTG CAGCTAAACT GAAACTGATC AGCAGCAATA GCATAGCAGA ATCCTTTTCA CTGCTCCGTC ACAACTATAA GGTTAAAAAT GTTTCATACA AAAGTTACCG GATTGGCATT GGCAAAAGCC TGATTGAGTT TGCTGTATTT GATCAGGGTT GCGCTATCCG TTATCATTTA CCTGCTAAGC AGGTACACAT TACAGCAGAG CAAACGAGTT TTGTTTTGGA TGGAAGTGCA GGTGCCTGGT TCTTTGAGCG CACAAATAAC TGGAAGCTTA AATCTTACGC CGGCTTGTGG ACTGAAACGC GAATTGACAG TCTGGATAAA ATTAGCCCTA CTGGCCCTGT ACAGGGAAAG CCTGTTGTGG CCCAGCTGGC AGATAAAAGT TATTTGTTTA TTGCAGAAGC TGCATTGCAG GGGTACAGCG GGATGCGGCT TAAAGCCAAT AAAAACAGTC TTACGGTAGA TTTTACCGAA GGAGATAAAG GTTTTTATGT CCAGCCGAAC CAGTTTCCTT TTACCCCCTG GCGCATCATC GGCTGGGCAG CAAACCTGAA TGAGCTGGTT AATCAACCCC TGGTTGAAAC ATTAAATGCA AACCCCGATA GTGCTTTGTT TAAAAATACG GATTATATAA TGCCGGGAAA AAGTGCCTGG AGCTGGATTA CAAAGGATGG GAACTACCTG GATCCTGTTA CAGAAAAAAG TATCATCGAT GCCGCTGCCC GGCTAAATTA TACCTATACA TTAATTGACG ATGGCTGGGA GGAAAAATGG AAACAAAAAT GGGAGGTGCT GAAAGATCTG GTAGAATATG GCCGTAAAAA AAAGATAAAG GTCTGGGTGT GGAAGGATTC CAAGTTTTTA AGGGATGTGG TGTATCGTGA TGCTTTTCTG GATACCTTGG GCCGTTTAGG TGTTGCAGGA ATTAAAATAG ATTTCATGAA CAGTGAAGCA AAGGAGCTGA TAGATTTTGA GACCAGCTTT TTAAAAGCTG CCGCTAAAAA AAAGCTGATG GTCAACTTTC ATGGCTGCCA GACCTCTACA GGGGAGTATC GTACCTATCC CAATGAAATG ACCAGGGAAG GTATCAGGGG AATGGAACTG AACATCATGA ATGAACCCAT TCCAGCATGG CACAATGCGG CGTTGCCCTT TACAAGGTTT ATCATGGGAC CTGCAGATTA TACACCTGGA CTTTTTTCCA AAAGAGGGGC AACAACACTT ACGCATCAGC TGGCCCTACT TTATTTGTTT GATTCACCTT TTCAATGCAT TGCCGAAAAT CCGGTAACAC TTTTAAAAGA TACCTTATAT CGTCCTATAC TTCCTTTGAT AAGGGATTTA CCAACAACCT GGGACAGTAC ATTGGTCCTA AATGGAAGCA GGATAGGCCA TTGCGCCATT GCAGCCAAAA AGAAAGGGAA TGACTGGTAT TTAGCCGCAA TTAACGGGCT TGCTGCAGAA AATTCCATAA CCCTGGATCT ATCCTTTATA AAAGACCTGT CGGCCTATAC GGCAATTGTT ATCTGCGATG CTAAGGGTGC ATTTTCCGCT TCATCGGTAA TTCCTGCCAT GTTAGATGAA AAGAATATAT CCATTCCCCC TGCGGGAGGT TTTGTAGTCC ATTTGAAACG GAAAGATAAA TAG
|
Protein sequence | MRQMGKKIRI TFGLVLCLTS CFMHSVRCAE KVLVLKSPSS SLTVRVFKGG DKGFFYTLSL KNRTLIHASH LGLSIAGRPF LNPAAKLKLI SSNSIAESFS LLRHNYKVKN VSYKSYRIGI GKSLIEFAVF DQGCAIRYHL PAKQVHITAE QTSFVLDGSA GAWFFERTNN WKLKSYAGLW TETRIDSLDK ISPTGPVQGK PVVAQLADKS YLFIAEAALQ GYSGMRLKAN KNSLTVDFTE GDKGFYVQPN QFPFTPWRII GWAANLNELV NQPLVETLNA NPDSALFKNT DYIMPGKSAW SWITKDGNYL DPVTEKSIID AAARLNYTYT LIDDGWEEKW KQKWEVLKDL VEYGRKKKIK VWVWKDSKFL RDVVYRDAFL DTLGRLGVAG IKIDFMNSEA KELIDFETSF LKAAAKKKLM VNFHGCQTST GEYRTYPNEM TREGIRGMEL NIMNEPIPAW HNAALPFTRF IMGPADYTPG LFSKRGATTL THQLALLYLF DSPFQCIAEN PVTLLKDTLY RPILPLIRDL PTTWDSTLVL NGSRIGHCAI AAKKKGNDWY LAAINGLAAE NSITLDLSFI KDLSAYTAIV ICDAKGAFSA SSVIPAMLDE KNISIPPAGG FVVHLKRKDK
|
| |