Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3346 |
Symbol | |
ID | 8254465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 3968696 |
End bp | 3969868 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644936998 |
Product | secretion protein HlyD family protein |
Protein accession | YP_003093602 |
Protein GI | 255533230 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.605498 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0983986 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCATAT CCACTTACAC CACAGAAGCC ATTTCCAATA CCGCATTAGC TTACCGTTCC AGGATCAACA GATCAACCCA AATCATTTAC CTGATTACCG TTCTTACTAT CCTGATTACC CTTGCGCTCC TCCCTTTCAT CAAAACATCC ATCAGTGTAA AAAGTGCCGG AATACTACAA TCATCAATTG AAAAAACAGA ACTTACTGTA CCTGCCAACG GACGTGTGAT CACCCTTAAA TTACAGGACA ACCAAAAAAT TAAACAGGGC GAAACTTTAT TGGTCATTGA TGCCGCACTG GCCAAACAAC AGGGCAATAT TGTACAAAAC CGCCAGGCCC AGTTATCAGC CTTTCTGCAG GACATCCATC TACTGCTCGT TTACATCAAC AGAAACGGCT ACAGTTACCC ACCCCTGCAA ACGGGGCAAT ACACGGCTTC CTGGCAACAG TTTGCCCAGG AACTGGAAAG TGCCAGAATA GCCAAAACAC AAGCCGAAAA CACTTTTAGC CGATACAACA GGCTCTTTCA GAACAAGGCC ATCACCGAAT CTGAATACGA ACATTATAAA TTTGAACTGC AACAAGCCGA ATCAGCCCTT AAAATGATCT GCAGCAAATA CAGATCGCAA TGGCAAACAG AAGCCAGCTC CCTGCGCAAC GAACTGCAAC AGCTAAGCGG CCAGCAGGTA GAACTGAACG AACAAAAAAA ATTATACACT TTAAAAGCCC CGGTAGATGG CTCCGTTCAG AACCTGACGG GCATAAAAGA AGGAGCTTAT GTGTTTGCAA ACCAAAAAAT AGGTGAAATC TCTCCCAATG CAGATCTTAC AGCATTTTGT TACGTTAAAC CATCAGATAT AGGGCTGATT AAAGTGGGCC AGGAGGTACG CTTCCAGATT GATGCTTACA ATTATAATCA ATGGGGACTG GCCAAAGGTA CAGTACTCGA CATCTCGGAT GATATCATAG TCATCAACAA CGATCAGCCG GTATTTAAAG TAAAATGCGC ACTCAGCCAA AACCACCTGC TGTTAAAAAA TGGCTATAAA GGGTATTTAA AAAAAGGAAT GAGCTTTACC GCACGTTTCA CAGTAACAGA ACGCAGCTTG TACCAGTTGC TGTATGATAA AATAGATGAC TGGGTAAACC CCAACCTGAA TGCTAAGCTA TAA
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Protein sequence | MSISTYTTEA ISNTALAYRS RINRSTQIIY LITVLTILIT LALLPFIKTS ISVKSAGILQ SSIEKTELTV PANGRVITLK LQDNQKIKQG ETLLVIDAAL AKQQGNIVQN RQAQLSAFLQ DIHLLLVYIN RNGYSYPPLQ TGQYTASWQQ FAQELESARI AKTQAENTFS RYNRLFQNKA ITESEYEHYK FELQQAESAL KMICSKYRSQ WQTEASSLRN ELQQLSGQQV ELNEQKKLYT LKAPVDGSVQ NLTGIKEGAY VFANQKIGEI SPNADLTAFC YVKPSDIGLI KVGQEVRFQI DAYNYNQWGL AKGTVLDISD DIIVINNDQP VFKVKCALSQ NHLLLKNGYK GYLKKGMSFT ARFTVTERSL YQLLYDKIDD WVNPNLNAKL
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