Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3112 |
Symbol | |
ID | 8254230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3718751 |
End bp | 3721282 |
Gene Length | 2532 bp |
Protein Length | 843 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644936766 |
Product | Glycoside hydrolase, family 20, catalytic core |
Protein accession | YP_003093371 |
Protein GI | 255532999 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.054438 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATAAGGG GAACTCATAT ATTGATCTTG CTCTTATTGC TGAACACTAA ACTGTTTGCA GCCGATATCC CTGTTGTGCC CTATCCGCAA CAGGTGCTGC AGGGAACTGC TCCGATAAAA GCGATCAAAA ATATACCCCT TAAAGCAGGG GGTATTGATC AGGCCATGCT GAAACGTTTG GCGGATGTGA CAAAATATAT GCTGACAGGT AAAAAAACTG CAGCTGCTGT AACTTTAAGT TTAACCGGAC GCGACAAAGA GACGGATGCA AGGATTAGGC CCTATGCCAC TAAATTAAAG ACCGACTGGA AAAAACAGAT TGGGAAAGAG GGGTATGTGC TGATCCTGAA CAATAAGGAC CAGTTGCTGG TGGCCAATAC CGAAACAGGA TTGTTTTACG GATTGCAAAC GTTAAAACAA TTGCTGGATG CAGACTGGAA TAAAGAGCTG GTGATTACCG ACTGGCCATC TTTACCGCAA AGGGTGATGT TTGACGACAT CAGCCGCGGC CCTATTTCAA AAGTTACTTA TATCAAAGAG CAGATTGAAA GGATGGCGGC TTTAAAAGTA AATGGTCTGT CGTTTTATAT CGAGCATGTT ATCCAGACAA AATCATATCC CGATTTTGCA CCGGCAGATG GTAAGCTGAC CATTGCCGAT GTGAAAGAGC TGGATGCCTA CGCTGCAAAA TACCACATGC AGCTGATTGG CAGTTTCCAG TCCTTCGGGC ATTTTAACAA TATTTTATCC CTGCCACAGT ACCAGTCGAT GGGCGAAACG TCTACCATGA TCTCGCCCCT CGATCCCAAA GCCAGACAAT TCCTGGAAAG TGTGATCACC GAGATGTGCG GCGCCTTCAG CTCTCCTTAT TTCAATGTGA ACTGCGACGA GACTTTCGAC CTGGGCAAGG GCAAATCTAA AAAATATACA GATAGTGTTG GGGTAGCCAA ATTTTATGCA GATCATCTTA AGTTTTTGTA TGATGTGGTA AAAAAGAATG GGAAAAAACT AATGATGTGG GGTGATATTG CCCTTCAGCA TGAGGAAATC CTGGATATGC TGCCCAAAGA CATTGTTTAC ATGACCTGGG AATATGGCGA TCCACAATCT TACAGCAAAT GGATAGATCC TTTTGTAAAA CGTAACCTCA GTTTTATGGT TTGTCCGGGT ATTTTAAATA CCAACAGGCT GTTCCCAGAT CTGGCCATTG CCAAAGCCAA TATCAATGGG TTTATTAAAG AAGGTTATGA AAAAGGAACC ATTGGTGCTT ATACTACCAT TTGGGATGAG GGTGGCGACC AGCTGTTTTC GGAAGACTGG TATGGCGTTT ATATGGCGGC AGAGAAGAGC TGGAACGTAA AATCAGTTTT AAATGATGGC TTCGATCTGC GTTATGAGAA GACAGCCTAT GGAACTGCAA ACGGGGCTTA TGTAAAAGCC ATTGGCAAAC TTATGGAGCT GAGGGACCTG CCGCTTACCT ATAACATGAC CCATGAAATC TGGTGGCAGC ACATTTTACC GCAAAACGGC GAAACACTTA TCCTGAACAA CAAAGACGTA GCCGAAGGTT TAAGACTGGT AAATGAAGCA GCACAGCTGC TGCAGAACGC AAAACCTAAG CGCCACCTTT CCGATCTGGC CACGCTGAAA TATATTGTTG ACCGGTACAA ACTGCTTTTT GATACCAGGA TACAGATTGC GGAACTTGCA AAATGGTACC AGCAGCAGCA GGGAAAACAG GTTGACGGTA TGAACGAACG TATTGTTTCC TTAAAAGTGC TGAAAAACAG GTACGAGGCT ATGGAAATAG ATTTCCGTAA TAAATGGAAC GCTGAAAATC AGCCTTATAC ACTTGATTAT GCTTTAAAAC CCTATAAAAC ACGTATTGCT GCATTAACAG ACCTTGAAAA TAAACTGCTC TCCCTGGAAA GACCTGGCAA AGTTAATTCC TTGCCAGCGG CTGCTGCTGT CGGACTAAAT GTGGTAGAAA GTGATCAGTA TTATTTTAAT TTCTGGTTGT TAAGCGGACC TTTTAAAAGC AAGTCGGGCG GATTCCCGCC ATTTTTATAT TCGGAAGAAC AATCAGCAAA CCATCCACCC AAACCTGGTG ATTTTGCACA GTACAACAGT AAACAGTTTC GCTGGATGAA ATACAATACC GACAATGGCG GTATCATCAA TAAATTTAAA GACCTGGGCA GCAATGCCTA TGTCTACGCC TTTTGTACCA TTAGCACGGA AACAGCCGGA CAGGTACAGG CATGGATCGG AAATGATTCA GCTGTAGAAC TTTTTTGTAA CAATAGTCCG ATTGCTGAAG GCAATGCGGC AGCAAAAAAC AACCCGGCCC TGCCTAAAGA AAAAGCTTAC AGCCTGCCTT TAAAAGCGGG CAGTAATTAT ATCCTGTTAA AAGTAAAAAG CAGCAATGCC AATGCAGCAT TTACTTTCAG ATTAGACACT ACAGAACCGG TAACCAATCA TAAACATAAA TATACCATCA ATGCTAACCA GAACAGTCAT GAAGCAGATT AG
|
Protein sequence | MIRGTHILIL LLLLNTKLFA ADIPVVPYPQ QVLQGTAPIK AIKNIPLKAG GIDQAMLKRL ADVTKYMLTG KKTAAAVTLS LTGRDKETDA RIRPYATKLK TDWKKQIGKE GYVLILNNKD QLLVANTETG LFYGLQTLKQ LLDADWNKEL VITDWPSLPQ RVMFDDISRG PISKVTYIKE QIERMAALKV NGLSFYIEHV IQTKSYPDFA PADGKLTIAD VKELDAYAAK YHMQLIGSFQ SFGHFNNILS LPQYQSMGET STMISPLDPK ARQFLESVIT EMCGAFSSPY FNVNCDETFD LGKGKSKKYT DSVGVAKFYA DHLKFLYDVV KKNGKKLMMW GDIALQHEEI LDMLPKDIVY MTWEYGDPQS YSKWIDPFVK RNLSFMVCPG ILNTNRLFPD LAIAKANING FIKEGYEKGT IGAYTTIWDE GGDQLFSEDW YGVYMAAEKS WNVKSVLNDG FDLRYEKTAY GTANGAYVKA IGKLMELRDL PLTYNMTHEI WWQHILPQNG ETLILNNKDV AEGLRLVNEA AQLLQNAKPK RHLSDLATLK YIVDRYKLLF DTRIQIAELA KWYQQQQGKQ VDGMNERIVS LKVLKNRYEA MEIDFRNKWN AENQPYTLDY ALKPYKTRIA ALTDLENKLL SLERPGKVNS LPAAAAVGLN VVESDQYYFN FWLLSGPFKS KSGGFPPFLY SEEQSANHPP KPGDFAQYNS KQFRWMKYNT DNGGIINKFK DLGSNAYVYA FCTISTETAG QVQAWIGNDS AVELFCNNSP IAEGNAAAKN NPALPKEKAY SLPLKAGSNY ILLKVKSSNA NAAFTFRLDT TEPVTNHKHK YTINANQNSH EAD
|
| |