Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2241 |
Symbol | |
ID | 8253347 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2594921 |
End bp | 2598004 |
Gene Length | 3084 bp |
Protein Length | 1027 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644935890 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003092507 |
Protein GI | 255532135 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.122093 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGACAT ATATATACTG GTTAAGCTTT AGCTGGCTGC TATTGAGCTG TTGCTTTGCA CATGCACAGA ACAGGATCGT TGAAGGCCTG GTTAAAGACA ATACAGGTGC TTTGCCAGGG GCATCCATTA CAGAAAAAGG AGTGGCCGCC AACGGCACTT CTACAGATGG AAACGGCAGG TTCCGACTTA CTTTAAAGGG TTCGGGGAAC ATCTTACTGA TCAGTTCCGT TGGTTATTTA CCCCAGGAAC TGAACCTGAA CGGCAAAAGT AACGTGGTGG TAACGCTTGT TGCCGATGCC AAAGGCTTGT CGGAAGTGGT AGTAGTGGGC TATGGCACCC AAAAGAAGCT GACCGTTACG GGCTCGGTAA GCTCGGTTAA AGGGTCGGAA CTCAGACAGA ATCCTTCGGC CAGTTTGCAG AACACCCTGA GTGGCCGCCT GCCCGGTTTC TTTTCCCAGC AGCGATCGGG CATCCCCGGC AGTGATGGGG CTGCCTTTTA CATCAGGGGG GTAAGCACCT TTTCCAATGG GGCAGGTGCC AACCAGCCAC TGATCATTGT GGACGATGTG GAATCTACCT ACGACCAGGT GGCCAGGATA GATGCCAACG AGATCGAAAG CATCTCTATC CTGAAGGATG CCTCTACAAC CGCCGTTTAC GGCATCAAAG GGGCTAACGG GGTAATGGTG ATCACCACCA GAAGGGGGCA GGCCGGGCCG GCTAAGATCA GCCTGCGTAC CGAGACCGGT TTTCAGCAGC CCACAAAAGT GCCTGAATAC CTCAATTCCT ACCGTACTGC ACTGCTCAGG AACGAGGCCC TGGCCAATGA TGGCCTGGCA GCAGAGTTCT CGGCTGCCGA CCTGGAGCAT TTCCGCCTCG GTGATGATCC TTACGGACAT CCGGATATCA ACTGGTATGA GACCCTGTTT AAGGATTTCA GCACCCAGTG GCGCAACAAT CTCGACATTT CGGGGGGAAC CGAGAACACC AGATACTTTG TTTCCCTGGG CAGCTTATGG CAGAACGGAA TGCTGCGCAA CTTTGGCGAA GCCTCAGATG TGAACAATGA TTATTCTTAT AAACGCTATA ACTTCAGGAG CAACCTGGAT GTGAACCTCA CCAAAACCTT AAGCCTGCGC TTCGACCTCT CGGGCAATAT CGGCAGGACC AATACCCCCA ATGTACCGGG GCCCTTCAGC CGTAACGATG TGTTCTTTGA GGTCAGCAAT TACCAGTTCC TGCCGCCCTA TGTATATCCC ATCTACAACC CCGATGGCAG CTATGGCTTC AGCAACAGGG TGCGCGACCG CATCAACAAT GTGGTGGGCA GGCTTTCCCT GGATGGCTAC CAGCGCAACT TTGAGAACAA CCTGAACTTT GTGGCCAATG CGGTGCAAAA GCTGGATGTG CTTACCAAAG GACTGTCGGT AAAGGCCAAC CTGTCCTATG CCAGCAGCCA GAGCTCATCC CGTAACCTGA CCCGTGACCT GTTCCCTTCC TTTATTTACA ACCCGGCCGA TGACAGTTAT ACCCCAAGGG ACGAGAGTGT GTTCCGCGTA CAGAAGTACC GGCTGCAGTA CGGGACGGGC AATATGCTCA GAAGGCTCAA CACGCAGCTG ATGCTCAACT ACGACAGGAG CTTTGACCAG CACCATTTAT ACGGACTGGC CCTGTTTAAC CAGATGACAG ACATTGCACC CAATACCGAT ACCCAGTACG ATTATGTGCC CTCCAACTCC AGGGGCTTTA CCGCAAGGCT GGGCTATGAT TACAAAAGCA GGTACCTTTT GGAGTTCAAC ATGGCCTATA ATGGTACCGA CCGGTTTGTG GGCAACAAGC GCTATGGCCT GTTCCCGGCC GTATCAGCAG GATGGAACGT GGCCTCGGAA CCTTTTATGA AGGGACTGAA AGCTGTACAG CTGCTGAAGC TGCGCGGTAG TTATGGCATG GTGGGCAGTG ATGTGGTATC GGGTGGCAAG TACCTGTACA AACAGAGTTA CGACAGGGGC GGAACCACCT CTTTTGGCTA TTCGCACAAT GCCTACAGTG GTATTGTGGA AGGTACCCTG GGCAATGCCG ATGTGAGCTG GGAAAAGGAG CGAAAGGCCA ATATCGGTAT AGACCTGCTG ATGTGGGGTG GCAAGCTGGG GGCCACCATC GATTATTTTG ACAATTACCG TTACGACATT TTAACGCCAA GGAACGGGGT ATCCAGCATT TTCGGGCAGG CTTTGCCGGT AATGAACGTG GGAGAGGTGA GCAACAAGGG CTATGAAGTG GAACTGACCC ATAACAACAG GATCAATGAC AAGCTGAACT ATACGATAAG GGGTAACATC TCGGTGGCCA GAAACAAGAT CCTGTACCAG GATGAGGCCG AACCGGCCTT TCCATGGCTG CGACAGACCG GCCACAGCAT CGGTTCCATT GCTGTATACA CCTTTAACGG CTTTTACAGG GATGCTGCAG ATGTGCAGGC CAATCCCGCA CCAAACGGCA TTGTACCCAA ACCGGGTGAC ATGAAATATA AAGACCTGAA CGGGGACGGG CTGATAGACA GCTACGACAA AAGCTATGTG GGCTACCCGA ACCTGCCCGA TACCAATTAC GGACTGAGCC TGGGGCTGAA CTACGGCGCT TTTAGCCTGA ATGTATTGTT CCAGGGGGCA GCAAACTTCA ACATCCGCGG AACGGCAGCA GCCATTGATG CCTTCCAGTC CAACCTGCAG CCTTTGCACG AGAAAAGGTG GACACCGGAA ACTGCTGAAA CTGCAGCTTA CCCCAGGTTG TCCTCCATCA TTGGCGGCCT GAACAGCTCT ACCGATTATC CTTCTACCTA CTGGCTGGTA CCGGGTGATT ACCTCAGGTT AAGATCGGCA GAACTCAGTT ACAGTTTGCC CCAGGGTATG GTCAAAAGGT TAAGGATGCA GTCGGCCAGG ATCTACACCA ATGGCTACAA CCTGATCACC TGGTCGAAGA TCGATAAACG CTACCAGCTA GACCCCGAAG CCTCTTCCGG TGGAGACAAA TACCCTTATC CGCCGCAAAG AATATACAAT ATTGGATTAA TGCTCTCCTT TTAA
|
Protein sequence | MKTYIYWLSF SWLLLSCCFA HAQNRIVEGL VKDNTGALPG ASITEKGVAA NGTSTDGNGR FRLTLKGSGN ILLISSVGYL PQELNLNGKS NVVVTLVADA KGLSEVVVVG YGTQKKLTVT GSVSSVKGSE LRQNPSASLQ NTLSGRLPGF FSQQRSGIPG SDGAAFYIRG VSTFSNGAGA NQPLIIVDDV ESTYDQVARI DANEIESISI LKDASTTAVY GIKGANGVMV ITTRRGQAGP AKISLRTETG FQQPTKVPEY LNSYRTALLR NEALANDGLA AEFSAADLEH FRLGDDPYGH PDINWYETLF KDFSTQWRNN LDISGGTENT RYFVSLGSLW QNGMLRNFGE ASDVNNDYSY KRYNFRSNLD VNLTKTLSLR FDLSGNIGRT NTPNVPGPFS RNDVFFEVSN YQFLPPYVYP IYNPDGSYGF SNRVRDRINN VVGRLSLDGY QRNFENNLNF VANAVQKLDV LTKGLSVKAN LSYASSQSSS RNLTRDLFPS FIYNPADDSY TPRDESVFRV QKYRLQYGTG NMLRRLNTQL MLNYDRSFDQ HHLYGLALFN QMTDIAPNTD TQYDYVPSNS RGFTARLGYD YKSRYLLEFN MAYNGTDRFV GNKRYGLFPA VSAGWNVASE PFMKGLKAVQ LLKLRGSYGM VGSDVVSGGK YLYKQSYDRG GTTSFGYSHN AYSGIVEGTL GNADVSWEKE RKANIGIDLL MWGGKLGATI DYFDNYRYDI LTPRNGVSSI FGQALPVMNV GEVSNKGYEV ELTHNNRIND KLNYTIRGNI SVARNKILYQ DEAEPAFPWL RQTGHSIGSI AVYTFNGFYR DAADVQANPA PNGIVPKPGD MKYKDLNGDG LIDSYDKSYV GYPNLPDTNY GLSLGLNYGA FSLNVLFQGA ANFNIRGTAA AIDAFQSNLQ PLHEKRWTPE TAETAAYPRL SSIIGGLNSS TDYPSTYWLV PGDYLRLRSA ELSYSLPQGM VKRLRMQSAR IYTNGYNLIT WSKIDKRYQL DPEASSGGDK YPYPPQRIYN IGLMLSF
|
| |