Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2226 |
Symbol | |
ID | 8253332 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2572144 |
End bp | 2575497 |
Gene Length | 3354 bp |
Protein Length | 1117 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644935875 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003092492 |
Protein GI | 255532120 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.377553 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAA AGACCTTTAT TTTTCTGTCC ATGCTGTGCT GTCTTTTTGT TGCGACAAAG GTTACAGGCC AAAACGCTGG CCTGCTGATC TCGGGAAAGG TAAGCTCCGG AACGGACAAA GAAACACTAC CGGGTGTGAG TATAAAGCTG AAGGGAACTA CCATGGGTAC TTCTACTGAT GTAAACGGCA AATATTTCAT CAAACTGCCA TCCGGTGATG GCGTACTGAT ATTTTCTTAT ATCGGCCACA GAACAAAAGA AATAGCTGTA AATGGCCAGG CCAGGCTTGA CGTGGTACTG GAACCGGATG TGAGTACAAT GGATGAGGTT TTAATTGTGG GTTATACACA ACAGTCGAGG AGCAAGACCA CTGCAGCCAT TTCCAAACTC TCGCCGGATG AACTTAAAAA TACGGCAAAC CCTAATCCTG TCCAGGCTTT ACAGGGCAAA ATTGCAGGTG TTTCAGTACC GGTTACCACC GGGCAGCCGG GTGTTGGGGC TACGAACATC ATCATCAGGG GCGGTACCAA GCCCAATGCT TACGGATCCG GACTGGGCAA CAATAACGGC AGCTCTACAG GTGCTTCTGA CGCCAATAGT CCGTTAGTAG TAGTAGACGG GGTATTCAGA TCAATGAATG ATGTGAACCC CGATAATATA GAATCCATGC AGGTAATGAA AGATGCCGCA TCTACGGCTA TTTATGGGGC CAGGGGTGCA AACGGTGTCA TCGTTATTAA AACAAAAAGT GGAAATGCCA ATGGTAAGAT GAGCATTTCG CTTAACCACC GTACCACCTG GGAAACACAG GCCCGTGATT ATGACTACCT GAACGCAGAA GAATACCTTC GGCTGGCACG TACCACGGTC AAAAATACAG CCGATGCACT GGACAAAAAT AATCTGCTCA ACAATGGTGG TTTTTCGGCC GGAACAAAGG TTTACACCGC CAAAGGACAG TATGGAAAGA ACATCAACCT GACTGCCTTA TATGACAACA TTGTCTCGGT TGAAGGACAG GCGTATGTAG ACAACCTATT GTCTAAAGGC TGGAAAGTAA TGGACGATCC CATCAATCCG GGTACAAGGT TATTGTATGC CGATAACAAC TACCAGGACA TGCTATGGAA TACGGGTTTG AGCAACAATG AAAATCTGGG TATTAGTGGG GGGAGTGAAA AATCTGACTA TAATTTATCG ATGAGCTATA CCAATCAGGC AGGGGTATTT GTAGGCACCA AATATAAACG CTATGATGCC CTTGGAAATT TCGGTTTTAA AGCAGCAGAT AATTTCAGGC TGGATGTGAT GCTCAATTAT CAGAACGTGA TGCCCAATTA TGTTGATGCC TATCAGAATG ATCTGGTAAG GGCAGTAAGG ATAACTCCAT TGATCCGTAC TTTTAAAGAT GACGGCAACC CTATGCCCGG TGAATTGTAT ACCGTTCGTA ACCGCTTTCA CACTTTAAAA TATGACGATA CGCGAACCTC AACCGAACGG CTGGTATCGA GGGTTGCGGG CGACCTGACC ATTATAAAAG GGTTGCATTT TAAACCGTCA TTTTCTTATC TGATAGATGA TTACAAGGAA CTGTTTATGA GAAAAGGTAC TCCTGCCGAT GAGATACAGC CTGCTACCCA ACGTCAGAAA ACGGATTATA CAAGAAACTC CAGACAACTG ATGATCGATC AGGTATTACA GTATGATTTC AGTTTGCAAA ATGCGCATAA TTTTATGGTG CTGGCAGGTG TTAACTATAC CAGAAATACC AATCATATTG CCAGTCTTGG TTCTCAAAGA GGTTCCAATG ATTATATCTA TACCATAGAC GAACCCTCTA CAACCATTGT TAATGGCGTA GTAGTTACCA ATGTGACCAA TTTTGGTACT TCGATAGGCG AAACAAGGTC TGCCAGTGCA TTCGGACAAT TCAATTACGA TTATAAAGCT AAATATTTAC TGACCGGCTC TTTAAGGTAT GATGGTTTTT CTAACTTCAC CCCGGAAAAT AAATATGCCT TTTTTCCTTC TGTTTCTGTA GGATGGAACA TTCATAAAGA AGAGTTCTGG AATTTAAAGG CAGTAAATGC CTTAAAACTA AGGGCCAGCT GGGGTACTGC AGGACTTAGC GACCTGAGTA TCACGGATAC TTATGGCGGA TATACTACAT CAAGCTATGC CTTAGGTTCT GGTATCTTAA GAGCCAATCT GGCCAATCCC AACCTGAAAT GGGAATCCAC TGCAACAACA GACCTGGCTT TTGACGCTTC TTTCTTTAAC AGCCGCATTA ACCTGACAGT AGATTATTAT AATAAACTGA CCAAAGACAG GCTAGACTCT AAACCATTAC CTTCTGAATC TCCTTTTGCC TCTATTACAT TTAACAATGG TGAACTACGG AACCGTGGTG TTGAGATAGA ACTGGGCGCT GCAATTGTTA AAACCAGGGA TTTTAACTGG AATACCAATT TATCCTTTTC TTACAACCAG CAGTTGATCA CCAAACTACC CGCAAACGGC CGTTTGAAGA ACAGACAGGG AGGAGACCTG GTGTTCGATC CGGCATCAAA TGCATTGGTA GAGAGGGGTG GTTTTGCAGA GGGGGAAAGA CCCTTTCCGA TTTATGCTTA CCGGGTAACA GGGGTTTTTG CCACTGATGC TGAGGCTGCA GCCTGGAATG CCAAAGTGAA AGACAACCTG GCTTCACCGC AAGGTATAGC TGTAGGAAAA CGTGGTGGAG ATTTCATTTT TGATGATGTA AACGGCGATG GTGTAATCGA CACCAAAGAC CAGGTATTTA TGGGCTACAG AAACCCCAAT AAAATGGGTG GGATGCAAAA TACATTTAAG TACAAAAACC TGAGCCTCAG GTTTACCATG GATTATGCAT TGGGACATCT GATCAGTAAT GGTGCCCTGG CACGCTCACT GGGACAGGGA AGGGCTTTTA ATGAAGGAGC TCCTGCTATT GCAATCGGCC CCGATATCTG GCAGAACCAG GGCGACACAG ATAAAAAATA CGCACGTTTT TCTTTTGCAG ACTTCGATTT TGGACAACGC AATTATCTGC GCAACGGAAC ACTTGGAAAT AACAACGGTT ACAATTCCGA TGTATCGGCC ATGTTTTCAA AGGGCGACTT TCTCGCTTTC AGGGAAATTT CAATTGCTTA TGATATCCCT AAAAAAATAC TCAATAAAAT ACGCGCATCC GGCTTAAATA TTTTTGCAAC GATATATAAT TTGGGTTATT TAACCGCTTA TGAAGGCTTA AACCCTGAAG TATATACAGG TTTTGATCCG GGTGGGTATC CAAGACCAAG ACAATTTTTA TTGGGTGCCA CATTAAAGTT CTGA
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Protein sequence | MKKKTFIFLS MLCCLFVATK VTGQNAGLLI SGKVSSGTDK ETLPGVSIKL KGTTMGTSTD VNGKYFIKLP SGDGVLIFSY IGHRTKEIAV NGQARLDVVL EPDVSTMDEV LIVGYTQQSR SKTTAAISKL SPDELKNTAN PNPVQALQGK IAGVSVPVTT GQPGVGATNI IIRGGTKPNA YGSGLGNNNG SSTGASDANS PLVVVDGVFR SMNDVNPDNI ESMQVMKDAA STAIYGARGA NGVIVIKTKS GNANGKMSIS LNHRTTWETQ ARDYDYLNAE EYLRLARTTV KNTADALDKN NLLNNGGFSA GTKVYTAKGQ YGKNINLTAL YDNIVSVEGQ AYVDNLLSKG WKVMDDPINP GTRLLYADNN YQDMLWNTGL SNNENLGISG GSEKSDYNLS MSYTNQAGVF VGTKYKRYDA LGNFGFKAAD NFRLDVMLNY QNVMPNYVDA YQNDLVRAVR ITPLIRTFKD DGNPMPGELY TVRNRFHTLK YDDTRTSTER LVSRVAGDLT IIKGLHFKPS FSYLIDDYKE LFMRKGTPAD EIQPATQRQK TDYTRNSRQL MIDQVLQYDF SLQNAHNFMV LAGVNYTRNT NHIASLGSQR GSNDYIYTID EPSTTIVNGV VVTNVTNFGT SIGETRSASA FGQFNYDYKA KYLLTGSLRY DGFSNFTPEN KYAFFPSVSV GWNIHKEEFW NLKAVNALKL RASWGTAGLS DLSITDTYGG YTTSSYALGS GILRANLANP NLKWESTATT DLAFDASFFN SRINLTVDYY NKLTKDRLDS KPLPSESPFA SITFNNGELR NRGVEIELGA AIVKTRDFNW NTNLSFSYNQ QLITKLPANG RLKNRQGGDL VFDPASNALV ERGGFAEGER PFPIYAYRVT GVFATDAEAA AWNAKVKDNL ASPQGIAVGK RGGDFIFDDV NGDGVIDTKD QVFMGYRNPN KMGGMQNTFK YKNLSLRFTM DYALGHLISN GALARSLGQG RAFNEGAPAI AIGPDIWQNQ GDTDKKYARF SFADFDFGQR NYLRNGTLGN NNGYNSDVSA MFSKGDFLAF REISIAYDIP KKILNKIRAS GLNIFATIYN LGYLTAYEGL NPEVYTGFDP GGYPRPRQFL LGATLKF
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