Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2189 |
Symbol | |
ID | 8253295 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 2512997 |
End bp | 2515570 |
Gene Length | 2574 bp |
Protein Length | 857 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644935838 |
Product | DNA topoisomerase I |
Protein accession | YP_003092455 |
Protein GI | 255532083 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.824425 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAAAA ATTTATTAAT AGTAGAGTCA CCTGCAAAAG CAAAAACCAT CGAAGGGTAT TTAGGTAAGG ATTTTTTAGT TAAATCGAGT TACGGGCACA TCCGTGATTT GGTTAAAGGG GATATGGCGA TTGATACTGC CAATAATTTT GCCCAGACCT ATGAAGTGCC GTCCGATAAG AAGCAGGTGG TTGCAGAACT TAAGAAATTG GCCAAAGACG CAGAAATGGT ATGGCTCGCA TCCGATGAGG ACCGCGAAGG AGAAGCCATA TCCTGGCATT TGTATGAAAC CCTGGGACTG AAGGAAAATA AGACCAAAAG GATTGTTTTT CATGAGATCA CCAAGCCCGC CATATTAAAA GCAATAGAAA CCCCGCGCAG CATAGATTAC AACCTGGTTA ATGCCCAGCA GGCTCGCAGG GTGCTGGACA GGCTGGTAGG TTTTGAACTT TCGCCGGTAT TATGGAAAAA AATTAAGCCT TCTTTGTCGG CCGGGCGTGT ACAGTCTGTC GCCGTTCGCC TCATTGTCGA CAGGGAACGT GAAGTCAATA AATTCAATGC TGCTGCAGCA TTTAAAATTA CTGCCGAATT TGTTACCGGT AATGGAAAAG AGCTGGTTAA AGCAGAGCTG CCACAGCGTT TTGAAAAAGA AGCTGATGCA GAAAAGTTTT TGAACGATTG TGCAGGGGCC GGTTTTTCGG TCGACAGCCT GGAAACAAAG CCCGCCAAAC GTAATCCTGC AGCGCCTTTC ACCACCTCTA CCCTACAGCA GGAAGCTTCG CGGAAGCTGG GCTATTCGGT AAGCAGGACG ATGCAGATTG CTCAAAGGCT ATACGAAAGT GGAAGAATAA CCTATATGAG GACAGATTCG GTGAATTTGT CGGAAACCGC TTTACAGGCT GCGGCCAGCG AAATCAGGTC GGCCTGGGGC GATAAATACC ATCAGCCAAG AACTTATAAA ACAAAATCTG CTGGTGCACA GGAGGCACAC GAGGCCATCC GCCCTACTTA TTTCAACCAG CATACCGTGC CGGGCGACAG TTCGGAGCAA CGCCTGTATG AGCTGATCTG GAAAAGAGCC ATTGCCTCAC AGATGAGTGA AGCGCTGTTT GAAAAAACTA CCGCACAGAT CGGTATCAGC ACCCGTAAGG AACAGCTGAT TGCAGAAGGT GAAGTGTTGA AATTTGATGG CTTTTTAAAA GTATACCTGG AATCTTCGGA TGAAGAGGAT GCGGAAGATT CGGAGGGCAA CAATATGCTT CCAGCACTTT CAAGGGGACA GGCGCTGACT TTAAAAGTGA TGAATGCAAC GGAAAGGTTT TCGAGACCGC CGGCAAGATA TACAGAGGCT TCATTGGTTA AGAAGCTGGA AGAGCTGGGT ATAGGCAGGC CTTCTACTTA TGCGCCAACC ATCTCTACCA TCCAGAACCG CGGATATGTG GTTAAGGAAG ACCGTGATGG CCGCCAGCGT AGCTTTGCAG CCATAGAACT GAGCAATGGT TCGGTAACCA AAAAGACAAA AACAGAAATT ACGGGTGCTG AAAAAGGCAA GCTCTTCCCT ACGGACATTG GCGAGGTGGT GAACGATTTC CTTGTAGAAC ATTTTAAAGG TATTGTTGAT TTTAACTTTA CAGCGAATGT AGAGAAGGAG TTTGACGAGA TTGCGCAGGG CCTGCAGGAA TGGACAAAAA TGCTCCACTC CTTTTATACG CCCTTTCACC TGGAAGTAGA AAATACGCTG GAAACGGCCG ACAGGGCCAA TGGAGAGCGC TTGCTGGGAC TGGACCCGGC AACTGGTAAA AATGTTTACA CCAAGGTTGG CCGCTTTGGC CCGCTGGTAC AGATCGGTGA AAATGACGAT GAAGAAAAAC CACGTTATGC CAGTTTGTCC AAATCGCAAT CGGTAGGTAC AGTTACACTG GAAGAGGCTT TAGAGCAGTT TAAACTTCCT TTTTCTTTAG AAGATTATCA GGGTAAAGAA GTTTCTGTTG GAGTTGGCCG TTTTGGGCCT TATGTGAAAT GGGGCGATGC CTTTATTTCT GTACCAAAGA ACGAAGACCC ATTGTCGATA GACCAGGCGC GTGCCATAGA GATCATTGGC GAGAAAATTA CGGCCGATGC ACCGGTGGCA CATTACCAGG GCATGCCGGT TACCAAGGGT ACAGGCAGGT TTGGGCCTTT TATCAAATGG AACGACCTGT TTATCAATGT GCCAAAGGCC TATAATTTCG ACAGGCTTTC GCAGCAGGAT ATTGAGGAGC TGATCGGTAA AAAGATCGAA AAAGAGGCCA ACAGGTTTAT CCAGCAATGG CCTGCCGAAA AGATCGCGAT CGAAAATGGC AGATGGGGAC CCTTTATCCG TTTTGGCAAG GAAATGCTGA AATTGCGTAA AAACCCGGCC ACGAATGATA AGTATACCCC TGAGGAACTG GCATCAATTG CTTTGGATGA AGTGAAGAAG CTGATTGTAG AGCAGGTGCC AAATGCATTT GAACCTAAAA AGAAAGCCGC TGCAAAAAAA ACGGGAGCTG CGAAGAAAGC ACCTGCAAAA AAGAAAGCAG TAGCAAAGAA GTAA
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Protein sequence | MAKNLLIVES PAKAKTIEGY LGKDFLVKSS YGHIRDLVKG DMAIDTANNF AQTYEVPSDK KQVVAELKKL AKDAEMVWLA SDEDREGEAI SWHLYETLGL KENKTKRIVF HEITKPAILK AIETPRSIDY NLVNAQQARR VLDRLVGFEL SPVLWKKIKP SLSAGRVQSV AVRLIVDRER EVNKFNAAAA FKITAEFVTG NGKELVKAEL PQRFEKEADA EKFLNDCAGA GFSVDSLETK PAKRNPAAPF TTSTLQQEAS RKLGYSVSRT MQIAQRLYES GRITYMRTDS VNLSETALQA AASEIRSAWG DKYHQPRTYK TKSAGAQEAH EAIRPTYFNQ HTVPGDSSEQ RLYELIWKRA IASQMSEALF EKTTAQIGIS TRKEQLIAEG EVLKFDGFLK VYLESSDEED AEDSEGNNML PALSRGQALT LKVMNATERF SRPPARYTEA SLVKKLEELG IGRPSTYAPT ISTIQNRGYV VKEDRDGRQR SFAAIELSNG SVTKKTKTEI TGAEKGKLFP TDIGEVVNDF LVEHFKGIVD FNFTANVEKE FDEIAQGLQE WTKMLHSFYT PFHLEVENTL ETADRANGER LLGLDPATGK NVYTKVGRFG PLVQIGENDD EEKPRYASLS KSQSVGTVTL EEALEQFKLP FSLEDYQGKE VSVGVGRFGP YVKWGDAFIS VPKNEDPLSI DQARAIEIIG EKITADAPVA HYQGMPVTKG TGRFGPFIKW NDLFINVPKA YNFDRLSQQD IEELIGKKIE KEANRFIQQW PAEKIAIENG RWGPFIRFGK EMLKLRKNPA TNDKYTPEEL ASIALDEVKK LIVEQVPNAF EPKKKAAAKK TGAAKKAPAK KKAVAKK
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