Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1918 |
Symbol | |
ID | 8253022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 2218415 |
End bp | 2220478 |
Gene Length | 2064 bp |
Protein Length | 687 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644935569 |
Product | TonB-dependent receptor |
Protein accession | YP_003092188 |
Protein GI | 255531816 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.138807 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.178557 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAAGAA AATCAAGTGC CATACGTGGC ATGAATTGTC GTTTCTCTGT TTTTTTTAAA GCTATACTTT GGCTGGGGAT TTTTATGCCC CTTACTTTGT TTGCCCAGGA GGATGTGGTT AAGGCTAAAA AAGCCGATTC TATTGATAAG GTAAACCAAC TTAAAGAAGT ACAGATCAGA ACCATAAAGA TTGGCAGGAG GCAAACTTCA TCTACACCTT TACAAATCCT TTCGGGCGAA GAGTTGCAAC GCCTGAACAG TTTATCGGTA GCCGATGCCG TCAGGTATTT TTCGGGGGTA CAGTTAAAAG ATTATGGTGG CATTGGTGGC TTAAAAACCA TCAATGTGCG CAGCATGGGT ACCAACCATA CTGCTGTTTT TTACGATGGG GTACAATTGG GCAATGCACA GAACGGGCAG GTCGACCTGG GAAAATTTTC ATTAGACAAC ATAGCCGAAA TTGAGCTGTA TAACGGGCAA AAGAGTACCA TATTTCAATC GGCAAAAGGC TTTGCTGCCG GAAGTTCATT GTATATAAAC TCAACGCAGC CTGATTTTGA AGATGGGCGC AGTGATAAAT GGAAAGCCAC ATTAAAAGGT GGTTCATTTG GCCTGATAGA TCCTTCTGTG CTTTGGCAGC ATAAAATCAG CGAAAGCATA TACAGTTCCT TAAGTGCCGA ATGGAAAAAA GCAAGTGGCC GTTACAAGTT CAGGGTAAGG AATTACGGTT ATGATACCAC AGCAGTAAGG GAAGATGGTG GGATTGAGAC CATGCGGCTT GAGCTTGGAC TGAACGGGGT ATTGCCGGAT AGCAGTCTGT GGACGGTTAA GTTGTATGGA TACAATGACA AACAGGGCTT GCCAGGGGCC ATAGTAAATA ATGTATGGCG TTTTCCGCAG AGAATGTGGA ACAGAAACTT TTTTGCGCAG TCGACCTTCA AAAAAGACCT GCACAAATAT CATCTTTTGG CTGCTGTTAA ATATGCTAAC GATTATACCA AATATCTTGA TCCGAACTAT GTAAAAGATA CTGGCTTTCT GACAAATATC TATAAACAGC AGGAGCTGTA TTTTTCGCTG GCCAACCGTT ACCAGCTCAG TTCATTCTGG GATATCGTTT TGTCGGGCGA TTACCAATGG AACACTTTGG ACGCCAATAT GGATCGTTTT CCATATCCTA CCAGGTATAC GGGCCTGCTG GCCCTGGCTA CCGAAATTCA TTTGGACAGG TTAAATATTC AGGCCAATTT GCTGGGCACA CTGGTTAATG ATGAGGTAGA ACGCTATTTT TCTGCGGGTA ATAAAAGGGA ACTTAAGCCC TCTGTAATGG TTTCCTGGCA GCCTTTCAGC TTAAAGGAAT TTCGTTTACG CGGATTTTAT AAGGATATAT TCAGGATGCC TACTTTTAAT GACCTGTATT ATACCCTATT GGGGAACACT TTCCTGAAAC CGGAATATGC AAAACAATAC GATCTTGGAT TTACCTATAT CAGGTTGATT GACAATCATT TGCTGAACCA GATCAGTATA CAGTCGGATG TATATTACAA CAAGATCAGA AATAAGATTG TTGCAGTTCC AGGGGCCAAT TTGTTTACCT GGAGCATGCA GAACCTGGGG TTGGTAGAGA TCAGGGGCCT GGATGTGAAT ATACAGACCG GCTGGCGTAT TGCCGATCAG CTGATGGTCA ACACCGGTAT TACCTATACC TATCAGAAGG CTTTGAACAT GACAGATGTG AACCTGAACT ATAAGAACCA GATCCCATAT ATTCCTGTAC ATAGTGGTTC CTTTACTGCT GGTGCCGACT GGAGAAACCT GGGTCTGAAC TACAGTTATA TCTATACGGG CGAGCGTTAT GATCAAAGTG CCAATATTAT TGAAAATTAT GTTCAGCCCT GGTACACCCA TGATATTGCC TTTCATTACC ATAAAGATCT AAAACATGCC CGTGTTAAAG TATCGGTCGA GGTAAACAAC CTTTTGAATC AAGATTATGA AGTGGTTACC AATTTTCCAA TGCCGGGCCG GTCGTATCGT TTCACCTTAT CTTATGCTTA CTGA
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Protein sequence | MIRKSSAIRG MNCRFSVFFK AILWLGIFMP LTLFAQEDVV KAKKADSIDK VNQLKEVQIR TIKIGRRQTS STPLQILSGE ELQRLNSLSV ADAVRYFSGV QLKDYGGIGG LKTINVRSMG TNHTAVFYDG VQLGNAQNGQ VDLGKFSLDN IAEIELYNGQ KSTIFQSAKG FAAGSSLYIN STQPDFEDGR SDKWKATLKG GSFGLIDPSV LWQHKISESI YSSLSAEWKK ASGRYKFRVR NYGYDTTAVR EDGGIETMRL ELGLNGVLPD SSLWTVKLYG YNDKQGLPGA IVNNVWRFPQ RMWNRNFFAQ STFKKDLHKY HLLAAVKYAN DYTKYLDPNY VKDTGFLTNI YKQQELYFSL ANRYQLSSFW DIVLSGDYQW NTLDANMDRF PYPTRYTGLL ALATEIHLDR LNIQANLLGT LVNDEVERYF SAGNKRELKP SVMVSWQPFS LKEFRLRGFY KDIFRMPTFN DLYYTLLGNT FLKPEYAKQY DLGFTYIRLI DNHLLNQISI QSDVYYNKIR NKIVAVPGAN LFTWSMQNLG LVEIRGLDVN IQTGWRIADQ LMVNTGITYT YQKALNMTDV NLNYKNQIPY IPVHSGSFTA GADWRNLGLN YSYIYTGERY DQSANIIENY VQPWYTHDIA FHYHKDLKHA RVKVSVEVNN LLNQDYEVVT NFPMPGRSYR FTLSYAY
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