| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1710 |
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| Symbol | |
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| ID | 8252812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2031159 |
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| End bp | 2032715 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644935362 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003091983 |
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| Protein GI | 255531611 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.190203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00186796 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCCGAA CGGTTAAATT GAAATTACTG GTTAGTTTAT TCATGATTGC AGCTTTTACA
AATTTTGTAA AGGCTGCTGA TTTTAACATT TTGAAATATG GGGCTATTGG CGATGGCACT
ACACTCAATA CGGAAGCGAT ACAAAAAGCT ATTGATGCCT GTTATCAATC CGGTGGGGGT
AAAGTGATCT TTCCTGAAGG AAGGTTCCTT TCAGGCACCA TCGTACTTAA AGATAACATT
ACCATTCATT TTGAAAGAAA TGCAGTGTTG CTGGGCAGTA CTGATCTGAA GGATTACAGA
AACCTTGACC CCTTTACTGA AGGACTGGGC ATTGATGTGG GCTGGGCTTT ACTGGTTGCT
GTTGATGCCA GGAATATAGG ACTGGAAGGC GAGGGAACTA TAGACGGGCA GGGATCTGCT
ATAAAGGAAA AGCACATTTT AACAGATACC CGACCGGAAG GACAACGCTG GGGGCTAAGG
CCATTTTTGG TACGCATTGT ACGATGTGAC GGGGTGACTG TGAATGGCGT TACACTTAAA
TATGCAGGTG CCTGGACATC GCACTATTTC CAGAGTAAAA ACCTACACAT AGAAAATGTA
AAGATCATGA GCGTTGGGGT AGCACATAAT GATGGGATAG GCATTGACGG CTGTCAGGAT
GTAGTGATCA AAAACTGTGA TGTGGTGAGC GGAGATGACG CACTGGTATT TAAAACTACC
TCCAGTAAAA TGGCCTGCAG AAATATAGAG GTAAGCGGAT TGCGCCTGAA AAGCAGTCAG
GCCGGGATAA AAATGGGAAC AGAATCTATG GCTGCTTTCG AGAACATTAA AATTTCTAAA
TGCCATATTT ATGAAACCAG GAACGGGGGA ATTAAGTTGC TTACCGTAGA TGGTGCAAAT
CTACGCAATG TAGAGATCTC AGACATTACG ATGGAAGATG TGAGGACACC TATGCTGTTT
CGTCTGGGAT CCAGGTTAAG TGTTTTTCGC AAAACAAGTG ACACTAAACA ACCTACAGGT
ACATTTGAAA ATGTAGTGAT CAGAAATGTT AAGGCCAATG CTGCTGCAAA TGCCCAGTTA
ATGCCGCCAT CCGGTATTTT AATCACAGGG GTTCCCGGTC ACTACATCAC TGGTTTAACA
TTGGAGAATA TTGAGATCAG TCTGGCCGGT GGAGGTTTGG CAGAACATGC CCGTCAGGCT
GTACCAGAAG CTATTGACCA GTATCCCGAA GTGAAGACCT TTGGCCCTCG TGTGCCTGCA
TATGGTGTTT GGGCAAGGCA TGTAAAAGGA TTGAAGCTTA AAAATGTGAA ATTTAATCTT
GATCACAATG ATCTTAGACC AGCATTGGTG TGTGAGGATG GTATAGACAT TGAAGTGTCC
GAATGGAAGC TTCCTGAAAC TTCTGGTGCT GAATCGATCA TCAGACTGGA AAATGTTCAA
AATGCAATCG TAAAAAACAT TTCTGGTAAG GTTACTGCCA AAAAATTTGT GCTGGTTGAA
GGAAATAGCA AAAACGTCAG CCTTAAGGAC AACAAAATTT CGGGTACCAC CAATTAA
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| Protein sequence | MIRTVKLKLL VSLFMIAAFT NFVKAADFNI LKYGAIGDGT TLNTEAIQKA IDACYQSGGG
KVIFPEGRFL SGTIVLKDNI TIHFERNAVL LGSTDLKDYR NLDPFTEGLG IDVGWALLVA
VDARNIGLEG EGTIDGQGSA IKEKHILTDT RPEGQRWGLR PFLVRIVRCD GVTVNGVTLK
YAGAWTSHYF QSKNLHIENV KIMSVGVAHN DGIGIDGCQD VVIKNCDVVS GDDALVFKTT
SSKMACRNIE VSGLRLKSSQ AGIKMGTESM AAFENIKISK CHIYETRNGG IKLLTVDGAN
LRNVEISDIT MEDVRTPMLF RLGSRLSVFR KTSDTKQPTG TFENVVIRNV KANAAANAQL
MPPSGILITG VPGHYITGLT LENIEISLAG GGLAEHARQA VPEAIDQYPE VKTFGPRVPA
YGVWARHVKG LKLKNVKFNL DHNDLRPALV CEDGIDIEVS EWKLPETSGA ESIIRLENVQ
NAIVKNISGK VTAKKFVLVE GNSKNVSLKD NKISGTTN
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