| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1581 |
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| Symbol | |
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| ID | 8252683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1868983 |
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| End bp | 1870452 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 644935235 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003091856 |
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| Protein GI | 255531484 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0871574 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA TACGTCATAT ATTAACCGTT ATAATCCTGT TATTTTCAAT TCCTGCTTTT
TCTGAAAATA TCTATAACGC ATCGTTGTTT GGAATAAAAT CCAATGGCTC TACGATGAAT
ACAAACTCTA TTCAAAAAGC AGTAAACTAT ATTAGTGAAA AAGGGGGCGG AACACTGCGG
TTCTATGTTG GCAGATACCT GACCGGTACC ATTCAGCTCA AATCGAATGT AACTATCCTT
TTAGAAGAAG GAGCGATTAT CGTGGGTTCC ACAAATATTT ACGACTACAA TATTGATGTA
CCCAACCCGG CTTTAATATA TGCTAAAGGG GTAAATAACA TTGGTATTAA AGGTAAGGGT
GTTATTGAAG GACAGGGGCG GGTGGTAGCT TATGACCTGC TTGACCAAAT TCATAAAGGA
CTTATTGTAG ATGACATTAA AAATGACCGT CCGACCAATC GTCGTCCTAA AGCCATTTAT
TTTAGAGAAT GTAATCAGGT AAATATTGAT GGGATTAACA TTTGGAATGC AGCCGACTGG
GTGCAGGTAT ATGATCAATG TCAACAAGTA TTAATTAATA ACATTACCGT TAAAAGCAAC
GAATTCTGGA ACAATGACGG TATTGATATT GTGGATTGTA AGGACTTTAA ATTGTTAAAT
TCTTTTATCG ATGCAGCGGA CGATGCCATC TGTTTAAAAT CACATGATAG AACAAAGCGA
TGTGAAAATA TAGAGATCCG TAATTGTGTT GCCCGCTCAA GTGCCAATGG GATCAAATTC
GGAACGGTAT CAGCGGGTGG TTACAAAAAT GTGAAAATTA TCAATAATAA GGTTTACAAT
ACGTTTAGAT CAGCAATTAC AATTGCTTGT CCTGATGGAG GAGTTGCCGA AGATATTTTA
ATAGATAGCT TGTATGCTTA TAATACTGGA AATCCTATTT ACTTGCGTAT GGGCTCCAGG
TGGAATAACC AGCGGATAGG AGGAATGAAA AATGTAACCA TTCAAAATTT GTATGCTCAA
ATTACGGCAG ATAAACCTGA TAGTGGTTAT ATTTATGAGG GCCCCATTGA AGATAACCCC
AGAAATATCT CTCCTTCGAG TATAGTGGGT TTAAAAAATA TGATTATTGA AAATATTAAA
TTGAAGAATG TTGAAATCGT ATATCCAGGT GGAGGAAATC CAAATTATGC TTTCAGAGGA
ACTACAAAAG AGGATTTGGC TGGTATCCCT GAAATGAAGG ATGCTTATCC TGAATTTTCG
CAGTTTAAAG AACTTCCGGC ATGGGGTTTC TTCATTAAAT ATGCTAAGAA TATTTCTTTC
GAGAATGTAA AGTTAATTGC CTTGAATGCT GATTATCGCC CTTCGGTGGT TTTGGATCAC
GTTAATGGAT ACACCTTTGA TAAATTGGAT ATTAAAGAAA AGGGTAAACG GAGCAAGAAA
CAAATCATAG TGAATGATTC TAGTAAATAG
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| Protein sequence | MKNIRHILTV IILLFSIPAF SENIYNASLF GIKSNGSTMN TNSIQKAVNY ISEKGGGTLR
FYVGRYLTGT IQLKSNVTIL LEEGAIIVGS TNIYDYNIDV PNPALIYAKG VNNIGIKGKG
VIEGQGRVVA YDLLDQIHKG LIVDDIKNDR PTNRRPKAIY FRECNQVNID GINIWNAADW
VQVYDQCQQV LINNITVKSN EFWNNDGIDI VDCKDFKLLN SFIDAADDAI CLKSHDRTKR
CENIEIRNCV ARSSANGIKF GTVSAGGYKN VKIINNKVYN TFRSAITIAC PDGGVAEDIL
IDSLYAYNTG NPIYLRMGSR WNNQRIGGMK NVTIQNLYAQ ITADKPDSGY IYEGPIEDNP
RNISPSSIVG LKNMIIENIK LKNVEIVYPG GGNPNYAFRG TTKEDLAGIP EMKDAYPEFS
QFKELPAWGF FIKYAKNISF ENVKLIALNA DYRPSVVLDH VNGYTFDKLD IKEKGKRSKK
QIIVNDSSK
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