Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1406 |
Symbol | |
ID | 8252506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 1674426 |
End bp | 1675367 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644935059 |
Product | RNA procession exonuclease-like protein |
Protein accession | YP_003091682 |
Protein GI | 255531310 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0847473 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATTAG ATGATTTTAT AGTGGTTACC AAAACAGGTT TGTTTTGTAA GTATGGCGAC TTTTACCTGG ATCCAAAGGA AATAGTGAAA CATGCAGTAA TCTCTCATGC ACATGGTGAT CATGCGATTG GCGGTAACCT CAATGTATAT TGTACCGAAG CAACGGCCCT GTTTATGAAG CACCGGTACA AAAAGTTCGC AGGGGCTGAA TTTTATATTA AACCCTATGC TACAGCCTTT GACCTGAACG GAGTGCGTAT CAGTTTTATT CCGGCAGGGC ATATATTGGG CTCAGCACAG GTTTTAATGG AGTATAAGGG GGTAAAATAC CTTTATACCG GAGATTATAA GCTACAACCG GATAAAACCT GTGAACCCAT TGAATTTGTA ACTGCCGACG TGCTGATTAC AGAAACTACT TTTGCGGACC CTGGTACACA ACATCCGGTG GCAGAAGAGG AGATCCTGAA ATTAAATGCT ACGCAGAACA ACATTATGCT GGGTGCTTAT TCATTAGGTA AGTGCCAGCG ACTGATTAGT TTAATGAATG ACCATTGTAT AGAAAAAAGG ATATTGGTAC ACCACAGTAT GTTGCCTTTT ATTAAAATAT ACGAACAGAT GGGGATAAAC CTTGGGCGGT ACGAGGCTTA CGACCGCAAG GTGATGAAAA ACAATGTAGC CAATATGGTT TATATGGTGC CCCCAATGGT GTTTAGAAGC TATTTTAAGG CCATTAATGT GATCAGGGTA TTTGCTACCG GCTGGAAACA CCTGCAAAAC AATCATGAAA TCCAGTTGTA TATATCTGAT CATGCCGATT GGAACGACAT TCTTTTTACG GTAGAAAAGG TAAAACCTAC GCAGATATGG ACCAATCATG GAAGTGGAAT TCAACTCAAA AGTCATTTTG AAAGAAGTTT GGTCGTTAAA TTGCTTAACT GA
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Protein sequence | MILDDFIVVT KTGLFCKYGD FYLDPKEIVK HAVISHAHGD HAIGGNLNVY CTEATALFMK HRYKKFAGAE FYIKPYATAF DLNGVRISFI PAGHILGSAQ VLMEYKGVKY LYTGDYKLQP DKTCEPIEFV TADVLITETT FADPGTQHPV AEEEILKLNA TQNNIMLGAY SLGKCQRLIS LMNDHCIEKR ILVHHSMLPF IKIYEQMGIN LGRYEAYDRK VMKNNVANMV YMVPPMVFRS YFKAINVIRV FATGWKHLQN NHEIQLYISD HADWNDILFT VEKVKPTQIW TNHGSGIQLK SHFERSLVVK LLN
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