Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1401 |
Symbol | |
ID | 8252501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 1671048 |
End bp | 1671998 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644935054 |
Product | NusB/RsmB/TIM44 |
Protein accession | YP_003091677 |
Protein GI | 255531305 |
COG category | [K] Transcription |
COG ID | [COG0781] Transcription termination factor |
TIGRFAM ID | [TIGR01951] transcription antitermination factor NusB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.00979954 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTTAAACA GAAGGCACTT AAGAATTAAA GCTCTGCAAA ATATTTTTGC TTGGCACATG ACAGACAAAA AGGATCTGGC TTCCTCAAAG AAAGCGTTAA TGCAAAGTAT TGATAATGTA TACGAAATGT ATATATGGAT GCTTTCGCTA TTGGTTGAGG TTACAGAATA TACAGGGATT GACGCTACAG AGCGCGCCAA TAAACATTTG CCTACAGCAG AAGACCTGAA CCCTAATTTA AAGCTGCTGA ACAATAAGTT TGCAGTTACA TTGAAAAAGA ATCCGGATTT TAGTGCTGCG GTACATAAAT ATAAGATCAA CTGGATGGCC GATCCGGAAT TCGTAAAGGC TATTTTTAAT ACTTTAAAGG TCACTCCAGA GTATGCCACC TATCTGGCCG ATGAGAACAA CGATCTGGAA GAATCAAAAA CGATCATCAA ATTCATCTTC AGAAAGGTCA TCCTAAAAAG CCATAATATT ATACAGGCTT TCGAGGACAG GTTCATCAAC TGGTCGGTAG ACAAGGAAGT AATGCAGGGA ATGGTGGCCA AAACCATCAA AAATTTTACT TCTGAAGATC CTTTTAAAAA TAAACTGACG CCGATAAGCC AGGACTGGGC AGAAGACAGC AAATTTGTAG AAGACCTGTT TGTGCACACC TTAAAAAGTG ATAAGGAATA CCAGGGCCTG ATTGCCGAAA GAACCAAGAA CTGGGAGTCG GAGCGTATTG CTTTAATGGA TACCATCCTG ATGAAAATGG CCATATGTGA ATTGATGAAT TTCCCTTCCA TACCTGTTAA AGTAACTATT AACGAGTACC TTGATCTCTC AAAAGATTAC AGTACTCCGA AAAGTAATTC ATTTATTAAC GGTATCTTGG ACAAAATTTT AGGCGATCTG AAAAGAACAA ACAGCATACA TAAAATTGGT CGCGGACTAA TAGAAGAATA A
|
Protein sequence | MLNRRHLRIK ALQNIFAWHM TDKKDLASSK KALMQSIDNV YEMYIWMLSL LVEVTEYTGI DATERANKHL PTAEDLNPNL KLLNNKFAVT LKKNPDFSAA VHKYKINWMA DPEFVKAIFN TLKVTPEYAT YLADENNDLE ESKTIIKFIF RKVILKSHNI IQAFEDRFIN WSVDKEVMQG MVAKTIKNFT SEDPFKNKLT PISQDWAEDS KFVEDLFVHT LKSDKEYQGL IAERTKNWES ERIALMDTIL MKMAICELMN FPSIPVKVTI NEYLDLSKDY STPKSNSFIN GILDKILGDL KRTNSIHKIG RGLIEE
|
| |