| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1299 |
|---|
| Symbol | |
|---|
| ID | 8252399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1543748 |
|---|
| End bp | 1545445 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644934953 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003091576 |
|---|
| Protein GI | 255531204 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAATT ATAAATATTC ATTGTTTAGT CTGGCTTTTA CAGCCCTGGT CTTTACCGCG
TGTCAGAAAC TGGAAGACCG TCCCCTGGAA TTAATTACAG AAGAATACCT ATGGGATTCC
AAAGATTCGC TGGGTACCAA TGCCAGTTAT TTTTTAAACG ATATTTATGC CGGCCTGCCC
AATGGATACA ACAGGATTGA TGGTAATTTA CTGGATGCAG CCAGTGATGA TGCCGTTCCA
TCAGCCGACA ATACGGCCAT TTCCAGGTTC ACCAATGGGG GCTATTCAGC ACTGGTAAAT
GGTGATGATG CCTGGGGTAG TAATTACACT AGCATCAGGA AATGTAATCT TTTTGTACAG
AACTTTCCCA AAGTGAACCT GAAAAAGTCT GATCCTGCCA TATTTATACA GGGCCAGTAC
TGGAAGGCAG AAAACCGCTT TTTAAGGGCC ATGTTTTATT ATGAACTGAT TAAACGTTAT
GGTGGGGTAC CTTTGCTGGG CGACCGCGTA CTGACCATTA ACGATGACCT GAGACTGCCA
CGCAATTCTT TTGACGATTG TGTAAACTAT ATAGTAAGTG AATGTGATGC CATTAGCGGC
GATTTAAGAC CTGACCCGAT CCCTGCTGGA GATTACGGCA GGATCACAAG ATCCATTGCT
TTAACCTTAA AGGCTAAGGC ATTGGTACTG GCAGCCAGCC CGCTGAATAA CCCAGGAAAT
GACATCGGTA AATGGAGAAA AGCAAAAAAT GCACTGGCTG ATGTGATCAG GACGGGTGTA
TATAGCCTGG AAACTTCTTT TGCCAATGTT TTTCTTGTCC GTAAAAATAA CGAGGTGATC
CTGGCCTACC AAAGGGCGCT GACATTTGAT GTGGAAACCA ATAATGCACC TGTTGGCTTT
ATTAATGGTA CTACAGCCAG CCGCGGGCGG ACCAGTCCTA CCCAGGAGCT TGTAGATGCA
TTTCCGACCA GAAAAGGTTT GCCGATTACA ACTGACCTGA AATCGGGCTC CAATCCGACA
GGTTATGATG CAAATGATCC TTATGCCAAC CGCGACCTGC GCCTGGATTT AACGGTATTT
CGGAATGGCT CACGCTGGTT AGGCCGTGAG GTCGAAACAT TTAACGGCGG CAGGGACCGT
CCGGGAAATT CAACTGTACA GACCAAAACG GGTTATTATA TGCGTAAGTT CATGGCCGAT
TTTTCTAATG GAACAGCCTA TTCCAACCAG ACCCATAATT TCCCGATATT CCGCTATGCC
GATATCCTGC TATTGTTTGC AGAAGCTAAA AACGAAGTGG ATGGCCCGGG TACAGGCGCG
GATTCGGTAT ATACCTACCT GCGGGCCATC AGGGCAAGGG CCGGTATCCT GCTGGGTACA
GCACCAAATA CTTATGGCCT TACTGATGGC CTCAGGGCCG ATCAGATGCG CGAACAGATC
CGTAATGACC GGAGAGTGGA ACTGGCATTT GAAGAACAGC GTTTCTGGGA TTTAAGGCGC
TGGAAAATTG CCGAACAGGT GTACAACAAA CCTTTACATG GCATCCGTAT TACCAAAACC
GGAACCGCAT TGAGCTACCA GGTAGAAACC TTGAGCATAC CTTTCCAGTT TTTTGCACCA
AGGATGTACA GGTATGCCAT TCCGTACAGC GAAATTTCCA AAAATGTAAA CCTAACACAA
AATGAAGGAT ATCAATAA
|
|---|
| Protein sequence | MINYKYSLFS LAFTALVFTA CQKLEDRPLE LITEEYLWDS KDSLGTNASY FLNDIYAGLP
NGYNRIDGNL LDAASDDAVP SADNTAISRF TNGGYSALVN GDDAWGSNYT SIRKCNLFVQ
NFPKVNLKKS DPAIFIQGQY WKAENRFLRA MFYYELIKRY GGVPLLGDRV LTINDDLRLP
RNSFDDCVNY IVSECDAISG DLRPDPIPAG DYGRITRSIA LTLKAKALVL AASPLNNPGN
DIGKWRKAKN ALADVIRTGV YSLETSFANV FLVRKNNEVI LAYQRALTFD VETNNAPVGF
INGTTASRGR TSPTQELVDA FPTRKGLPIT TDLKSGSNPT GYDANDPYAN RDLRLDLTVF
RNGSRWLGRE VETFNGGRDR PGNSTVQTKT GYYMRKFMAD FSNGTAYSNQ THNFPIFRYA
DILLLFAEAK NEVDGPGTGA DSVYTYLRAI RARAGILLGT APNTYGLTDG LRADQMREQI
RNDRRVELAF EEQRFWDLRR WKIAEQVYNK PLHGIRITKT GTALSYQVET LSIPFQFFAP
RMYRYAIPYS EISKNVNLTQ NEGYQ
|
|---|
| |