Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1298 |
Symbol | |
ID | 8252398 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 1540947 |
End bp | 1543736 |
Gene Length | 2790 bp |
Protein Length | 929 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644934952 |
Product | TonB-dependent receptor |
Protein accession | YP_003091575 |
Protein GI | 255531203 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0684189 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGTAATT ACTACTTGAA AAGAAAAATA GTACGGTTAC TTTTTTTATT GATCCCGGCT TTAACGCCGG CACTGGTTTT CTCTCAGACA GCTGCCGTAG ACACAAGCCG CGTTTACCTG CTCAATAAAA GCCAGCAAAA AAGTAACCTG CTCCAATCAA CTGCTACCGT ATATAACGAA CAGTTGATCA CCACTCCCGC GCCCTCATTT CTACAGGCTT TGCCAGGCAG GTTGTCTGGG CTGTATACCA GGCAGAGAAG TGGGGTTCAG GCAACGGATG ATCCCATATC GGTAGTTGAT TTTAAGATCA GGGGCCAGAT ACCTACGATC TTAATTGATG GTGTACCCAG GGATTTCAGT TCCATAGAAC CCGAATCGAT AGAGTCGGTC ACCATCCTGA AGGATGCTTT GTCTACCGTT ATGTTTGGTC AGCGTTCCTC AGGTAACATT ATCCAGGTGA TCACTAAAAG ACCTGTAGCT ACACCATTTA AATTGTCCTT TACTGCCCAG CATGGTCTGC AAAGCATGAT CAATAAGTCT AAACCTGTTT CTGCTGCAGA TTTTGCCATT CTTTACAATG AAGCCCGTAA TAACGACGGA CTGGCACCGG TTTACTCCGC TGCCGATATT CTGGCTTACC AGACTGGCTC TGATCCTTTA TTTCATCCCA ATAACGATTA TAGTAAACTT TTCCTGAACA AAAATGCAGC ATTAGACCGT TTTAACATCA ACATCAACAG CGGAAATGAA ACTGCCCGTT TTTATGTGGC CATGGATTAC CAGCGGGAGG GCGGCTTTTT TAATACTGCA GATATCAATA CGTACAATAC CAATTCTGGT GTAGACCGCT ATATTGTAAG GTCTAACGTG AGTATAGACC TCAATAAAAA CCTGAACATT GGCCTGAATA TTTTTGGCCG CATCCAGGAT GCCAATCAGC CTGGTGGTAC TACTTCCAGC ATTTTTTCGG CCATAACTTA TACCCCAAAC AATGCCTACA GTATTTTTAA TCCTGATGGT TCTTTGGGGG GCAACAGTAC CTTTTCAAAT AACATTTACG GCATGCTCAA CAATTCGGGA TATCGTAAAT CAAGCGCAAG GGACCTGGCT GCTGATATGG AGGTTACACA AAAGCTAAGT GATCTGGTAC CGGGTCTATG GGTTAAAGGA AATATTTCCT ATAACAATAC CGTGGTTACC TCGGTAGACA GGAGCAAAGA TTTTCTGGTG TACAATTTGG ATATTGGCAG TGGAACACCT GTTTACACAC AAATAGGGAC CAGCAGGGCC CAGTCGACCA CCTTATCTAT AGGTACGCGC CGTACTTATA CATATGGTAA GTTAAGCCTG GGTTACGATA AAAGTTTTAA CGGGCACAAC CTGAGCCTGC TGGCTTTGGC TGATAACCAG TCGACCACCG TCAACCTGGA CCTGCCTGCC AGCTATACCA ATATTGCCGG TAATGCCACC TATAACTTTA AAGAAAAATA TTTTGCTGAA GCGGCATTGA GCTATGGCGG GCATAACCGC TTTAAACCGG GCAACAGGTT TGGCTTATTT TATGCCGCAG GCTTAGGTTG GAACCTGGCT AAAGAAGATT TTTTAAAGGA TGTATCCTGG ATCAGTATCC TTAAGCCACG TATCAATTAT GGCCGCACGG GCAATGCAAA TGTAGGCTAC TATGTGTACG ATCAATATTA TGATTATGGT GCATCAGCTG CGGCCTATTA TTTTGGCTCA ACACCAGCCG TTGCCAGGTA TTACAGGGAA CTGCCCCTGG CCAATCCAAA TGCAACCTGG GAAAAAGCAA ATAAATTAAA TATAGGTTTA GACCTGGAAC TATTTGCCAG TCGATTTAAA ATTACCTCAG AGTATTTTAA CGACAGCTAT TCCGACCTGA TGCAGAACAG GGGCAAAACG ATCCAGCTGA TCGGGCAAAC GTACACTGCA GAAAATGTAG GCAAAAACAG GTATAGCGGC TTTGAGAACA GTGTTTCCTG GAATGATAAA TCGGCCTCCT TCGGTTATTT TGTTTCCGGA AACATTTCCA TCCTGCAATC TAAGGTGATT TATCAGGACG AGATTTTTCG CCAGTACGAC TATCAAAAGC GTACCGGTTT ACCTGTAGAC CAGGTTTTTG GTTACCTGGC CGATGGCTTT TTCCAGTCGC AGGCCGATAT CAATGCCAGC CCTGCGGTAG ATGGTTATAC CCCTGTACCG GGCGATATTA AATATAAGGA CCTGAATGGG GACGGCATCA TCAACCAGTT TGATGAAACG GCATTGGGTA CCCAAAAGCC AATGATCTAT TATGGCCTGA CTACCGGTTT TAATGTAAAA GGCTTTGATC TGAGTATTTC CATCCAGGGG GTGGCTAACC GGGACATTGT GTTTGCCAGT GGTTACAATT CGGTAGCTGA TGCCAGGGAG TTTGATTTCC AGAACAGCGG CAATGCACAG GCATTTGAGC AGCATTTAAA CCGCTGGACC CCTGCCAATG CAGCCAATGC CACTTACCCA AGACTTTCTA TCGGTACCAA TACCAATAAC CAGCGCGCCT CAAGTTTCTG GGTACAGTCT ATGGCCTACC TGCGCCTGCA AAATGTAGAT CTGGGCTATA CCATACCGGC CAGTTTAACC AGCAGGATTA AACTGAGCAG TGTGCGTGTT TTTGCAAATG CATTTAACGT ATACTCTTTT GATAAACTAA ACTATAGCGA CCCGGAAGGT TATAACTCTA TTTTTCCGCT CCGCAGAACG TTCAATATAG GCCTCAATGT TAAATTATAA
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Protein sequence | MCNYYLKRKI VRLLFLLIPA LTPALVFSQT AAVDTSRVYL LNKSQQKSNL LQSTATVYNE QLITTPAPSF LQALPGRLSG LYTRQRSGVQ ATDDPISVVD FKIRGQIPTI LIDGVPRDFS SIEPESIESV TILKDALSTV MFGQRSSGNI IQVITKRPVA TPFKLSFTAQ HGLQSMINKS KPVSAADFAI LYNEARNNDG LAPVYSAADI LAYQTGSDPL FHPNNDYSKL FLNKNAALDR FNININSGNE TARFYVAMDY QREGGFFNTA DINTYNTNSG VDRYIVRSNV SIDLNKNLNI GLNIFGRIQD ANQPGGTTSS IFSAITYTPN NAYSIFNPDG SLGGNSTFSN NIYGMLNNSG YRKSSARDLA ADMEVTQKLS DLVPGLWVKG NISYNNTVVT SVDRSKDFLV YNLDIGSGTP VYTQIGTSRA QSTTLSIGTR RTYTYGKLSL GYDKSFNGHN LSLLALADNQ STTVNLDLPA SYTNIAGNAT YNFKEKYFAE AALSYGGHNR FKPGNRFGLF YAAGLGWNLA KEDFLKDVSW ISILKPRINY GRTGNANVGY YVYDQYYDYG ASAAAYYFGS TPAVARYYRE LPLANPNATW EKANKLNIGL DLELFASRFK ITSEYFNDSY SDLMQNRGKT IQLIGQTYTA ENVGKNRYSG FENSVSWNDK SASFGYFVSG NISILQSKVI YQDEIFRQYD YQKRTGLPVD QVFGYLADGF FQSQADINAS PAVDGYTPVP GDIKYKDLNG DGIINQFDET ALGTQKPMIY YGLTTGFNVK GFDLSISIQG VANRDIVFAS GYNSVADARE FDFQNSGNAQ AFEQHLNRWT PANAANATYP RLSIGTNTNN QRASSFWVQS MAYLRLQNVD LGYTIPASLT SRIKLSSVRV FANAFNVYSF DKLNYSDPEG YNSIFPLRRT FNIGLNVKL
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