Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0788 |
Symbol | |
ID | 8251877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 933469 |
End bp | 935280 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644934438 |
Product | RagB/SusD domain protein |
Protein accession | YP_003091072 |
Protein GI | 255530700 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCTT TAAAATATTT ATCGATCCTG CTGATTATAG GATTCAGTTC CTGTAAAAAG TTTTTGGATA CCAAGCCTAC AACCGCTGCT CCTGAATATT ATTATTCTAC TGAGTCGGAA ATGAATGCCG CCCTAACTGG TGTTTACGAT GTGATGGGTA GTGAAAACGT ATATGGAAAC TCAATTTTTA CCCGGATCAC TGCAGCAACA GATGAAAGTT ATTACCAGCG TAATACCCAG TCGACCGGTA TCCAGGTACT AAACTTTGAT GCATCAGATA CCGATGTAAG GCTATTATGG AAGTCCCTTT ATGAAGGGAT TGAACGGGCC AATCTGGTGC TGGCAAATAT CAATAAACCT GCAATGGATG AAACAAAAAG AGGGGCAATA GAAGGCGAAG CCTTATTTTT AAGGGCGTAT TATCATTTTT TACTGGTAAG CAACTGGGGC GATGTGCCTT TGATCATCAA ACCTACCAGC TCTATCACCA CTACAGATGT GGCCCGTACA CCTGCTAAAG AGGTGTATAA TCAGATTATT GCAGATATGA CAAAGGCCGA AGGACTGGTC AAATCTATTT CTGATATTGG TTTTGGTGGC AGGGTAAGCA AAAGTGCAGT TCAGGGCATC CTGGCCAGAG TAAATCTGTA TATGGCTGGT GCCCCTGTAA ATGATGTTTC CAGGTATGCA GAAGCATTGA AATGGGCAAG GAAAGTGGTT TCCACAGTTG GTTTACATAG TTTAAACAAC GACTATAAGC AAATTTTTAT CAATTATGCC CAGGATAAGT ACGATGTTAA GGAAAGCATC TGGGAAGTTG AGTTCTGGGG TAACCGCATC GGCAACGCCT ATACAGAAGC AGGTAGGGTA GGTAATACCA ACGGTATTTT ATGTTCTAAT GAAAAAGAAG GTTATAGCTA TGGTTTTATT GCTGCTACAC CTACTTTGTT TAAATTGTAT GAAGCTGGCG ACCTGCGCAG GGATTGGGCA ATTGCGCCAT TTAAATATGT GGGAGCCACT ACTGCCAGAA CAAACTGGAC ACCTGCAGAA ATCTATCAGC GCAATACCGG CAAATTCAGA AGGGAATATG AGTTGCTTGA AAAGCAAAAA AACTATACAC CTGAAAATTT TCCTTTATTA CGCTATGCGG ATGTATTGCT GATGCTTGCC GAGGCTGCAA ACTATGTAGA CGGGCCAACA ACAGAGGTCA TTGATGCCAT CAACCAGGTA AGAAAAAGGG CTTTTGGTAA AGTACTGGCT GGCGAACAGG TCCGCAGCAT TAACGTTACT AACGGCGGTA CAGGTTATTT AGCTACTAAT TTACCTACTG TTACCATTAG TGGTGGTGGT GCTACACGTA ATGCAACAGC TACTGTAACC ATAACAAGTG GTAAAATTAC AGCCATAACC CTTACAGACA ATGGTGCTTT TTATACTTCT GCACCTACGG TAACGATATC TGGTGGCGCC GGTAGCGGTG CTGTGGCAAC AGCTACCATT TCTGTTGCCA ATGATGAAGT GCTTAAACCA GCTCAAACAG CATCTAAAGC AGCTTTACTG ACAGTAATTA AAAATGAAAG GGCCAAAGAA CTTTGCTTTG AAGCTTTACG CCGGAATGAC CTGATCCGCT GGGGTGATTT CATGACCAAT ATCCAAAGTA CAGCCGCAGA AATTACTGCA GGTGCACCAA CGGCATTTAA ATATGCAGCT CTTGCAGGCA ACAATGCCAA CGTCAGACAC CTGTTGTTGC CGGTACCATT ATATGAAACT TCTGTAAATC CGGCTTTGCT GCCTAACAAT ACAGGCTGGT AA
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Protein sequence | MKALKYLSIL LIIGFSSCKK FLDTKPTTAA PEYYYSTESE MNAALTGVYD VMGSENVYGN SIFTRITAAT DESYYQRNTQ STGIQVLNFD ASDTDVRLLW KSLYEGIERA NLVLANINKP AMDETKRGAI EGEALFLRAY YHFLLVSNWG DVPLIIKPTS SITTTDVART PAKEVYNQII ADMTKAEGLV KSISDIGFGG RVSKSAVQGI LARVNLYMAG APVNDVSRYA EALKWARKVV STVGLHSLNN DYKQIFINYA QDKYDVKESI WEVEFWGNRI GNAYTEAGRV GNTNGILCSN EKEGYSYGFI AATPTLFKLY EAGDLRRDWA IAPFKYVGAT TARTNWTPAE IYQRNTGKFR REYELLEKQK NYTPENFPLL RYADVLLMLA EAANYVDGPT TEVIDAINQV RKRAFGKVLA GEQVRSINVT NGGTGYLATN LPTVTISGGG ATRNATATVT ITSGKITAIT LTDNGAFYTS APTVTISGGA GSGAVATATI SVANDEVLKP AQTASKAALL TVIKNERAKE LCFEALRRND LIRWGDFMTN IQSTAAEITA GAPTAFKYAA LAGNNANVRH LLLPVPLYET SVNPALLPNN TGW
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