Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0725 |
Symbol | |
ID | 8251813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 839166 |
End bp | 842555 |
Gene Length | 3390 bp |
Protein Length | 1129 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644934374 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003091009 |
Protein GI | 255530637 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTAAAC TTTTAAGGGT TATGAGATTA GCGATCCTAC TGCTTATTGC TGCTGTTTTC CAGGTCCAGG CAGGTACCTA TGCACAAAGA GTAACCTTAA ATGAAAAAAA CAGCAGTCTT ACCGAGGTAT TGGAAAAACT GGGTGCACAG AGCGGTTACG ACTTTGTGTA CGGACATGCT CTGCTAAAAA CTGCAAAACC GATTACCGTT GAACTTAAAA ATGCGCAGTT TGGCGAAGCC CTGAAAAAAG TATTTGAAGG GCAGGATTTT ACCTATACCG TCCGGAACAG GACCGTAGTG GTGTACCAAA AGGAAAATTC TCTTTTTAAC CGTATCAGCG ATTATTTTAA GGCCATTAGC ATCAACGGCA AGGTAACCGA CGAAAAAGGC GGTGCCCTGC CCGGCGTAAC TGTACAGTTA AAGGGTACAT CTACGATTGC CTATACCAAT GCTGCTGGTA ACTACGCCAT TACTGTGCCC GATGAAAATG CCGAACTGGT ATTTACCTCT ATTGGTTTTA CTACACAGGA AATTAAGGTG GGCAATAAAA CTACTATTAA CCTAACACTT AAAGAAAGCA CCAGCCAGCT GGAAGAGACC GTGATTGTTG CCTATGGCAG CCAAAAGAAA AAAGATCTTA CAGGATCTGT TTCTACCATT TCCGGCGAAT CCCTGCATGA TCTTCCCTCT ACCATTAATC TCGAACAGGC TTTACAGGGC CGGGCTGCAG GGGTGCAGGT GATCCAGGAA ACGGGTCAGC CAGGTGCAGC TACAAAAGTA AGGATCAGGG GTTCTTCTTC GTTACTGGGC TCTAATCAAC CCCTCTATAT CGTTGACGGT GTTCCTGTAG TAGCTGAAGG AAACATTCCC GCTAATGGAA ATGTGATCAA TAATGACCTG ATCACGCAGG GATTAAGCAG TCCGCTTAAT AACCTCAGTC CGAATGATAT TGAAACCATA AGTATTCTTA AGGATGCTTC TGCTACAGCT ATTTATGGTT CGAGGGCAGC AAACGGAGTG GTCATCATTA CTACCAAAAA AGGTAGTGAA ACAAAAGGCC CGGTATATTC TTTTAATACC TCTATAAGCT ATCAGAAAGC ACAAACGCTG GATGTACTGA ATGCCGACCA GTTCAGGGAA CTATGGACAG AGGCTGCCAA CAATTCTACT TCTACTGCAT TGGTAGTACA GCAAATGCGA AACGGTACTT ACTTTAAAGA TGCAAATACC GACTGGGAAA AGGAACTGAG TCCCATTAAC CCGCTCTCCA GAATTATAAA CTTTTCCGCT TCCGGGGGAA ATGAAAAAAT GCGGTATTAT GCCAGTATTG GTACAACCGC ACAGGATGGA ACCTTTAGAA ATTCAAACTT CGACAGAAAA AACCTATTGG TCAACCTTGA TTTTCAGGCA AGCTCTTCAC TCAAATTTGG CACATCTATC AATCTCTCCA ACTCTGGTCA AACTTCGCCA GATGCTAGTT TATTTGCCAG AATGTATACC TACAGACCAG ATATGCCGGT TTATAATCCT GATGGGACGT TTACATTTTC TGATGGTGGC GTTTCTGAAA ACCCGGTTGC ACTGTCAAAA TCGAGTAACA TCAATAAGAC CAATCTGTTG ATCGGATCGG CTTTTGGAGA ACTGAACTTT GCCAGACATT TTGTACTGAA GTCTACGCTT TCTATCAATT ACAATACGGG AAATTTAAAA AGCTTCTACC CAAGTCAGAC TGTTAAGGGA GGCTGGGCAA AGGCCACAGG CGATGGCACA GGTTTTGGAC AGCAAAACAG TAGCCAGGCT CTTTCACACC TGTGGGAAAA TATATTAACC TATAACCAGA GCTTTGGTAA ACATGTGCTG GAAGGTATTG CCGGTGCTTC ATGGCAAGGA AATGAAAACG AATATATGTC GGCTTCGGGT ATGGGTTTTC CACAGGACGA TATCCTGAAC AACCTGTCTA GTGCCACCAG CAACTTCCTT ATTTACTCCG GAAAAACACA AAGTGGCCTT GTATCCTTTT TTGGCCGTGT AAACTACAGC TATGCCGATA AATACCTTTT GTCCGTTTCG GCACGAACCG ATGGTTCTTC CAAATTCGCA GTTGAAAACA AATGGGCATT TTTCCCTACA GTATCGGCAG CATGGCGACT TTCAGAAGAG AATTTCCTTA AAGATGTTAG TTTTTTGGAT GAGCTGAAGA TCAGAGGAAG TATAGGGCTT ACCGGGCAGC AAAACTTTGG TGTATACCAA TGGAGGGCTT TATTTGCTGC CGATCAGTAT GGTGATAATC CGGCAGTAAT ACAAACCCAG CTGGGCAACA ACCGCCTTAA ATGGGAATTG ACTACGCAAA CTGATATTGG CCTGGATTTT TCTTTGTTTA AGGGACGTTT AAACGGTGCA TTGGATTATT ATGTAAAAAA TACCAAAGAT TTGCTATTTA CCGCTTTGTT GCCGGGTAAT GCAGGTTTTG CCAACGCTAT CAGCAACCTG GGCAGGTCAC AGAATAAAGG CTTTGAACTT GCCCTGGATG GTGACATCAT CCGAAGTAAA GATTTTACCT GGAACCTGGC TATTAATGTG GCAACAAATA AAAACAAACT GGTTTCCTTA AACAGCGATT TCCTGAACCC AGCCAATGGC AACATCACCC CCCCCTCAGG TGGTGGAGTA TTAAGGGTTG GAGAATCTTT AGGTCTGATG TACGGACGCG TGGCAGAAGG GATCATTCAG AACAAAGCGC AACTGGATGC ATTAAATGCA CTGGCGCCTG ATGGTATTTA CCAGGTGGCT GGGACAGCAC CCGGTGATCT ATGGTACAGG GACCTGAATG GAGATGGAAA AGCAACTACA TTGGACCAGA CGGTTATAGG TAACGCTTTG CCGGACTTTT CAGGTGGTTT TACCAATAGT TTCAAATATA AAAATTTCAG GGTAAATGCC TTATTTACCT ATTCTGTGGG GAATGACCTG AACTGGACGG CCCAGGCTGC AGCCATTACT TTTCAATCCC AGGCTTCCAG TGAAAACAAA CTGGCCATTG CCATGAACAG GTGGACGCCG GAGAAACCCA CCAGTCAGCC ACGTGCAGTA TATGGCGATC CCAATTCCAA TTATTTTGGT TCAAGTTACT TTGTATATGA TGCCTCCTTC CTCAGATTAA AAAACCTTAC AATCGCCTAT GCTTTGCCCG CCAGACTGTT ACAAAAAACC AGGTTTATTA AAAACATAGA AATTAATGCT TCAGGTACCA ACCTGCTTAC GTTTACCAGT TATCCGGGTG CCGATCCCGA AACAAGCAAC GCTTCCGGAA ACGACATCAA TGTTGGTTTG GATGTTAGCA GGTATCCAAT AGCAAAAGTT TATACACTTG GTATAAGAGC TGGTTTCTAA
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Protein sequence | MPKLLRVMRL AILLLIAAVF QVQAGTYAQR VTLNEKNSSL TEVLEKLGAQ SGYDFVYGHA LLKTAKPITV ELKNAQFGEA LKKVFEGQDF TYTVRNRTVV VYQKENSLFN RISDYFKAIS INGKVTDEKG GALPGVTVQL KGTSTIAYTN AAGNYAITVP DENAELVFTS IGFTTQEIKV GNKTTINLTL KESTSQLEET VIVAYGSQKK KDLTGSVSTI SGESLHDLPS TINLEQALQG RAAGVQVIQE TGQPGAATKV RIRGSSSLLG SNQPLYIVDG VPVVAEGNIP ANGNVINNDL ITQGLSSPLN NLSPNDIETI SILKDASATA IYGSRAANGV VIITTKKGSE TKGPVYSFNT SISYQKAQTL DVLNADQFRE LWTEAANNST STALVVQQMR NGTYFKDANT DWEKELSPIN PLSRIINFSA SGGNEKMRYY ASIGTTAQDG TFRNSNFDRK NLLVNLDFQA SSSLKFGTSI NLSNSGQTSP DASLFARMYT YRPDMPVYNP DGTFTFSDGG VSENPVALSK SSNINKTNLL IGSAFGELNF ARHFVLKSTL SINYNTGNLK SFYPSQTVKG GWAKATGDGT GFGQQNSSQA LSHLWENILT YNQSFGKHVL EGIAGASWQG NENEYMSASG MGFPQDDILN NLSSATSNFL IYSGKTQSGL VSFFGRVNYS YADKYLLSVS ARTDGSSKFA VENKWAFFPT VSAAWRLSEE NFLKDVSFLD ELKIRGSIGL TGQQNFGVYQ WRALFAADQY GDNPAVIQTQ LGNNRLKWEL TTQTDIGLDF SLFKGRLNGA LDYYVKNTKD LLFTALLPGN AGFANAISNL GRSQNKGFEL ALDGDIIRSK DFTWNLAINV ATNKNKLVSL NSDFLNPANG NITPPSGGGV LRVGESLGLM YGRVAEGIIQ NKAQLDALNA LAPDGIYQVA GTAPGDLWYR DLNGDGKATT LDQTVIGNAL PDFSGGFTNS FKYKNFRVNA LFTYSVGNDL NWTAQAAAIT FQSQASSENK LAIAMNRWTP EKPTSQPRAV YGDPNSNYFG SSYFVYDASF LRLKNLTIAY ALPARLLQKT RFIKNIEINA SGTNLLTFTS YPGADPETSN ASGNDINVGL DVSRYPIAKV YTLGIRAGF
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