Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0565 |
Symbol | |
ID | 8251652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 673761 |
End bp | 675782 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644934213 |
Product | RagB/SusD domain protein |
Protein accession | YP_003090849 |
Protein GI | 255530477 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.642447 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACGT CAATCATAAA AAGATTAGCA TTCGTAGCGG TCATCATCCA GTTGATTGCG ATGACAACAT CCTGTAAGAA GTACCTAAAT ATCGATGAAT ATTTTGACGA TGAATTTAAC ATCGATTCCG CTTTTGCCAA CCCTCGAAAT ATGGAAGCTT ATATGTGGGG TGCAGCGGCC ATGTTTCCAG ATGAATCAAA TACCATTCGC TTTGGTTATA CACCTGGCCC TATGGCAACC GATGAAGCCT TGAACGGGCT TACCGGAGGT GGCTCGAGCA ATGTGTATTA TGGAATGGAT TTTGCCACCG GACGCATTAC TTCAGATTTC TATGGAGACA GCAACCCTAA CTTAAATCAA TGGGCAAAAT ACTACAAGAT TATCCGTAAA TGTAACAGTG TCCTGCAAAA CCTTGATCGC CCTAAGGGCA TGAGCAATTT AGATCGGCTC AGGATTGAAG GATACACGCG TTTTATCCGT GCATATGCTT ACTACAACAT TTTAGTAGAT TATGGTCCTG CGATCCTGCT GGGTGATGAA GTGATCAACA CCAATGAATC CCTTGAATAT TATGACCGTC CCAGAGCGAC CTATGATGAA ACGATGGACT ACACCTGCGA TGAGCTTGAA AAAGCAGCAA TGCTTATGCC TGCAGAAGTT TCGCTACTGG ATTTTGGCCG CCCGAGTAAA GGAGCTGCAC TTGCTTTGAT TGCCCGCCTG CGGCTGATCC ATGCAAGTCC GCTGTTTAAT GGCGGACCGG TAGCCAGTTC TTATTTTGGC AACTGGAAAC GCAAAACCGA TAATGTCAAT TACGTATCAC AGCAATATAA TGAAGCAAGA TGGGCAGTAG CTGCAGCCGC AGCCAAGCGC GTGATGGATC TTGGTCAGTA CAGGTTATAT ACCGCAGTGA AAGATGACAA AACCCCTGCG CTTCCTGCCG GAGTCAATTC GGATCCAAAT TTCTATCTTG ATTATCCAAA TGGAGCAGGA GGAATAGATC CGTTAAGATC CTATTCGGAT ATTTTTAATG GCGAGGCTGT TGCTGAAATT AATAAAGAGA TCATCTGGGG CAGAAATACA GGTTATATGG TAACAACCAT CAGTCAGGGC TCTATGCCGC CTTCTCTCGG TGGCTGGGGG CGTTTCTGCG TTACACAGAA AGTGGTTGAT GCCTATCTGA TGGCCGACGG CCGTACCAAA GAAGAGGCCA CCAGCAATGG GTATTATTCA GAAACAGGCT ATACTACACA GGCCAAAAAT TTTTCAGGAT ATCCACTCAA TTCCGGAGTT TACAATATGT ATGCTAACCG CGAAATGCGT TTTTATGCAT CTATTGGATT TAACGAGGCC GTATGGCAGG CACAGTCCAG TACGACCATC AACAACTATA CTGCCAAATA CTACTACCAG GCCCCCGATG GTCGTGGCGG AGTGGCTGCT ACTTCACCCA ACTACCCGAT CACGGGCTAC GTGATCAAAA AATTCAATCA CCCGATGGAT GCTTTTTCAG GTACAGGTGC ACGTCACATC AAAAAAGCTT ACTCCATCAT CCGCTATGCG GAGATACTCT TATCCTATGC CGAGGCACTT AATAATTTGA CAGGTAGTCA CACGGTAAAG CTTGGGGATA AAGAATATAC CCTATCCAGA AACCAGGAAG AGATAAAGGG TGCCTTTAAT CTCGTTCGCT ATCGTGCCGG GCTGCCTGGA TTGAGCGCCA CCCAAATCAG TACTGCTGCG CTAGTTCAAA AACAGATTGA ACGTGAACGC ATGGTAGAGC TGCTGTGGGA GAACAGACGC TATTATGATG TACGTCGCTG GGGCATTTAT GAAGAAACAG AACGCGAACC TATGCGCGGT ATGAATCCGG ATGGCGCTAC CAAAGATGCC TATTACCAAC GTGTTATACC GGGAACATCG TCATTTATGA CACGTGTAGT AGACAAAAAA GCCGTTTTTG TACCCATACC ACGTGCCGAA ATGAGAAGGT TACCTTCTTT AGATCAGAAT CCGGGCTATT AG
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Protein sequence | MKTSIIKRLA FVAVIIQLIA MTTSCKKYLN IDEYFDDEFN IDSAFANPRN MEAYMWGAAA MFPDESNTIR FGYTPGPMAT DEALNGLTGG GSSNVYYGMD FATGRITSDF YGDSNPNLNQ WAKYYKIIRK CNSVLQNLDR PKGMSNLDRL RIEGYTRFIR AYAYYNILVD YGPAILLGDE VINTNESLEY YDRPRATYDE TMDYTCDELE KAAMLMPAEV SLLDFGRPSK GAALALIARL RLIHASPLFN GGPVASSYFG NWKRKTDNVN YVSQQYNEAR WAVAAAAAKR VMDLGQYRLY TAVKDDKTPA LPAGVNSDPN FYLDYPNGAG GIDPLRSYSD IFNGEAVAEI NKEIIWGRNT GYMVTTISQG SMPPSLGGWG RFCVTQKVVD AYLMADGRTK EEATSNGYYS ETGYTTQAKN FSGYPLNSGV YNMYANREMR FYASIGFNEA VWQAQSSTTI NNYTAKYYYQ APDGRGGVAA TSPNYPITGY VIKKFNHPMD AFSGTGARHI KKAYSIIRYA EILLSYAEAL NNLTGSHTVK LGDKEYTLSR NQEEIKGAFN LVRYRAGLPG LSATQISTAA LVQKQIERER MVELLWENRR YYDVRRWGIY EETEREPMRG MNPDGATKDA YYQRVIPGTS SFMTRVVDKK AVFVPIPRAE MRRLPSLDQN PGY
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