| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0343 |
|---|
| Symbol | |
|---|
| ID | 8251428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 401264 |
|---|
| End bp | 404554 |
|---|
| Gene Length | 3291 bp |
|---|
| Protein Length | 1096 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644933991 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003090629 |
|---|
| Protein GI | 255530257 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.603691 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGGG GTCAGCAGTA TAAATGGCTG GCCGGCCAGA GCTATTTAAC TATCCGGATT
TTTATACTAT ATTTCGGGTA CGTACACTTA TTAATAAAAC TTAAAATTAA ACCATATAAC
ATGCTGAAAA TTTACAACAA AACCAAACGA CCATGGCGAA TTCCCTGCTG GGGAATAGCC
ATGCTGATTT TCCTGACCTC CTTTATGCCG GGGCGGGTTT TATCACAAGA TTTAAAATTA
ATTACCGGTA CAGTTACTGA AGCTAACGGA GCACCACTTC CGGGTGTAAG TGTTAAAGTA
AAGGGTACAC AAAAGGCGAC TTCAACAAGT AATGCCGGAA AATACAACAT CCAGGCTAAA
AGTACTGATG TTTTAGTTTT TTCTTTTGTT GGCTCAGAAA CACAGGAAGT CACTGTTGGT
GCCAGAACAA CAATCAATGT TAAACTGGCT GATGATGCGA AATCATTAGA CGAGACCGTG
ATCATTGGTT ATCAGACGGT AAAGAAAACT GATTTAACCG GTGCAATCGG CCAGGTTAAA
ATGTCTGACC TTAATAAAGC TCCTGTGTCC TCATTTGCTG AGGCGCTTGC CGGACGTGTA
TCTGGCGTAC AAGTGTCATC AGGAGATGGA CAACCGGGTA GCAACATGAG CATTATGATC
AGGGGGGCGG CATCAATCAA TAACAGTACG CAACCTTTAT ACGTTATCGA TGGTTTCGCT
ACGGAGGCGG TTGAAAGTAC CAGCTTGAAC CCTGATGATA TTGAATCCAT AACCATATTG
AAAGATGCAG CTGCTACTTC TGTTTATGGA TCAAGAGCAA CAAATGGTGT TGTAGTGATT
CAAACTAAAA GTGGTAAAGT TGGGAAACCA GTGATTTCCT ATAACAGTTC ATATGGTGCC
CAGATCGTAG CTAAAGAAAT TGATCTGATG AGCCCTTATG AATTTGTAAA ATACCAGTTT
GAACGTAACC CAACAGATGC AGCGGCAAAC TATCTTACCA ATGGGAAAAC ATTGGAGTCC
TATAAAAACG ACAAGGGTAT TTACTGGCCC GGACAAATTC TTCGCACCGG TTCTGTGTTT
ATAAATAATA TTGCGGTAAG AGGCGGTAGC GAAAATACCA AGTATGCCAT ATCGGGTGGG
GGCTTTGATC AAAAGGGAGT GCTGATTAAC ACCGGTTACA AAAGATATCA AGGAAGGGCA
AAACTTGATC AGACCATAAG TAATAAGCTT AAAGTCGGTA TCTCTGCAGA TTATATGGAT
GTTTCTGCTT TTGGGGTGCA GGCTTCCAGT ATTCCTACCG GCGGTGGTGC TTCCAGCGCA
ATCTGGTTTA GGACCTGGGT TTACAGACCC ACCGGCGGAA GTGCAACCAC CTACGACATT
TTGAATGAAG ACGGAGATCC CGAGAGCATT AATAGCAGTG ACATCAGGTT AAACCCAAGG
GTAACCGCAG AAAATGAATA CTCGTATAAT ACGTATGTGA ACTTTAACGC GAACGCCTAT
CTTACCTATA ATGTAACAAA AGATCTGATT TTAAAAGTTA CAGGGGTAAA AAATGCACTT
AGAAGAGGTC AGGATCGCTT TTATAATTCA AAAACGCCAC AGGCAAGCCC ATTAAATCCA
CTGGCTACTC AGGGTATATT TGGATCCGTG CTTCAATCTT TTGCCGACAC CTGGTCGAAC
GAAAACACCC TTACTTATAA CAAACTTTTT AATGATACCC ATTCTTTAAC GGTAATAGGA
GGTAATAGTC AAACATCTTA TAAAAGTAAG TCTAATGGAT TTACCTCTAC CTTTTTACCA
GAAGAAAGTC AGGGTATGGC CGGCCTGAAT GAAGGAACAG TTACCGCTCC TGTGGCAACA
GCCAGCAGCA ATACACTTTC TTCTTTTTTC GGGATCGTAG ATTATAATTA TAAATCTAAA
TATTACCTCA AAGCAGGATT AAGGGCCGAT GGATCTTCAA AGTTTTCACA ACGCTGGGGA
TATTTTCCAT CGGGTGCAAT TGCCTGGAAT ATGCATAAAG AAGACTTTAT GAAAGACCTG
ACTTTTATTT CTAATTCTAA ATTGAGGTTA AGTTATGGCG TAACAGGAAA CAACAGAATT
GGTGATTTTG ACTGGTATGC CAAGCTGGAA CTGGATGCCG GAGCTGGTTA TTCCTACAAT
AACTCACCCA ATATAGGGGC TTACATATCA GGCGTTGAAA ACAGGAATTT GAAATGGGAG
AAAACTGAAA GCTCTGATAT TGGCTATGAA CTGGGTTTAT TTGACAATAA GATTGAACTT
ACGGTAGATG CCTATCGGAG AACTACAAAA GATTTGCTGA TCACTAATGC CCCTATTGCG
GCACATACAG GATTTGCAAC GGCCACTAAA AACATAGGTT CATTGCGTAA CCAGGGACTG
GAATTTGGTT TAAATACGGT TAATATAAAA ACCCGGTCAT TCACATGGGA AAGTAGTTTT
AACATCACTT TTAATAAGAA TAAAATTATT GCATTAAACA GGGATCAGGG ATTTATACAA
ACCACTCCTT CATTTGAAAC TGCTTTTACC GATATGTATC TTTCAGAAGT TGGGCAGCCC
TTGGGCATGA TGTATGGTTA TGTATGGGAC GGTAATTACC AATATGCCGA TTTTGACAAT
CCTTCACCGG GTACCTATAT CCTTAAGCCA TCAGTACCTA CAAATGGAGC TTCAGTGATC
CAACCTGGAG ACATTAAATA TAAAGATTTA AATGGGGATG GAACAGTAAA TTCATTGGAC
CGGACAATTA TTGGCCGTGG CCAACCCATT CATTTTGGCG GGTTCTCTAA TAACTTCGGT
TATAAGAATT TTAGCCTGAA TGTTTTTCTA CAATGGTCTT ATGGAAATGA CATTTACAAT
GCCAACCGGC TTATATTGGA AGGTAATGCA AACGGAAGAA CGGATTTGAA CCAGTTTGCA
AGTTATATTG ACCGTTGGTC CCCAACAAAC CAAAACAGTA AAAACTATCG TGCCGGAGGC
CATGGGCAGG TGGGTTACCA TTCTTCAAGA GTTGTGGAAG ATGGCTCATA CCTGCGGTTA
AAAACGGTTT CACTGGCTTA TGCCTTACCA GCCAAATACA TCAAAAGATT ATTTCTGAGT
TCTTTAAGTC TGAATGTTTC AGCACAGAAT TTATTTGTTT TGACCAAATA TACCGGTATA
GATCCTGAAG TTTCAACACG CGGGCCATTC TCCGTATTGT CGCCAGGATT TGATTATTCT
CCATATCCGC AGGCCAGAAC AATTGTGGTA GGACTAAACG CAGCATTTTA A
|
|---|
| Protein sequence | MDRGQQYKWL AGQSYLTIRI FILYFGYVHL LIKLKIKPYN MLKIYNKTKR PWRIPCWGIA
MLIFLTSFMP GRVLSQDLKL ITGTVTEANG APLPGVSVKV KGTQKATSTS NAGKYNIQAK
STDVLVFSFV GSETQEVTVG ARTTINVKLA DDAKSLDETV IIGYQTVKKT DLTGAIGQVK
MSDLNKAPVS SFAEALAGRV SGVQVSSGDG QPGSNMSIMI RGAASINNST QPLYVIDGFA
TEAVESTSLN PDDIESITIL KDAAATSVYG SRATNGVVVI QTKSGKVGKP VISYNSSYGA
QIVAKEIDLM SPYEFVKYQF ERNPTDAAAN YLTNGKTLES YKNDKGIYWP GQILRTGSVF
INNIAVRGGS ENTKYAISGG GFDQKGVLIN TGYKRYQGRA KLDQTISNKL KVGISADYMD
VSAFGVQASS IPTGGGASSA IWFRTWVYRP TGGSATTYDI LNEDGDPESI NSSDIRLNPR
VTAENEYSYN TYVNFNANAY LTYNVTKDLI LKVTGVKNAL RRGQDRFYNS KTPQASPLNP
LATQGIFGSV LQSFADTWSN ENTLTYNKLF NDTHSLTVIG GNSQTSYKSK SNGFTSTFLP
EESQGMAGLN EGTVTAPVAT ASSNTLSSFF GIVDYNYKSK YYLKAGLRAD GSSKFSQRWG
YFPSGAIAWN MHKEDFMKDL TFISNSKLRL SYGVTGNNRI GDFDWYAKLE LDAGAGYSYN
NSPNIGAYIS GVENRNLKWE KTESSDIGYE LGLFDNKIEL TVDAYRRTTK DLLITNAPIA
AHTGFATATK NIGSLRNQGL EFGLNTVNIK TRSFTWESSF NITFNKNKII ALNRDQGFIQ
TTPSFETAFT DMYLSEVGQP LGMMYGYVWD GNYQYADFDN PSPGTYILKP SVPTNGASVI
QPGDIKYKDL NGDGTVNSLD RTIIGRGQPI HFGGFSNNFG YKNFSLNVFL QWSYGNDIYN
ANRLILEGNA NGRTDLNQFA SYIDRWSPTN QNSKNYRAGG HGQVGYHSSR VVEDGSYLRL
KTVSLAYALP AKYIKRLFLS SLSLNVSAQN LFVLTKYTGI DPEVSTRGPF SVLSPGFDYS
PYPQARTIVV GLNAAF
|
|---|
| |