| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5290 |
|---|
| Symbol | |
|---|
| ID | 3715186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5952979 |
|---|
| End bp | 5954220 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | D-amino-acid dehydrogenase |
|---|
| Protein accession | YP_351018 |
|---|
| Protein GI | 77461511 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.483786 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAGC GTGTGTGCAT CATCGGCGGC GGCGTGATCG GGCTGGCAAC GGCCTGGGCG
CTGGTGCGCG ACGGCTTCGA GGTGACGGTG GTCGAGGCGC GGCAGTCGCT GGGCAGCGAA
ACCAGCTTCG CCAACGGCGG CCAGTTGTCC TACCGCTACG TTGCGCCGCT GGCCGATGCC
GGCGTGCCGT TGCAGGCAAT CGGCTGGATG CTGCGCGGCG ACTCACCGCT CAAGCTGCGC
CCGCGCCTGG ACCCGGCGCA ATGGCGCTGG ATGGCCTCGT TTCTCGCCGC GTGCCGCACC
TCGGTCAACC GCGAAAACGC CGCGCATCTG TTGCGTCTGG CGCTGTTCAG CCAGAGCACA
CTGAAACGCT GGCGCGAAGA CGACGGACTG GTCGGTTTCA ATTGGCGGCG CAACGGCAAA
CTGGTGACCT TCCGCAATGC CGCCAGCTTC GAGCATGCAC GCAACGGTCT GGCCGATCCG
CAGCAACAAC AGGTGTTGTC CGCCACCGAA TGTGCACGAC TGGAACCGGC ACTGGCCGAT
GCGCCGTTTG TGGGCGCGAT CTACACGCCG GATGAAGAAG TCGGCGACTG TCACGGCTTC
TGCCAGCAGC TGGCGGCGCG ATTGAAGGCG TCGGGTCGCT GCGAGTTTCG CCTTGGGCAG
GCAGTCACCG GCATTCGCCA CAACCACGGC GCGGTCACGG CCATTGAACT TGGCGACGAA
ACCCTGCCGG TCGAACAACT GGTGATCGCC GCCGGCCATC GCAGCCCGTT GCTGGCGCTG
CCCGGCCTGC GCCTGCCGTT GTACCCGCTG AAGGGCTACA GCCTGACCGT GCCGATCGGC
AGCGAGCATC GGGCGCCGGA CGTGAGCATC ACCGACTACG ACCGCAAGAT CGTCTACGCG
CGTATCGGCG AACAACTGCG CGTGGCGGCG ATGGTCGACA TCGTCGGTTT CGACCCGGCG
GTGGATCCCG AGCGGCTGGC GCTGATCAAA CGTCAGGCCC GCGGCACCTT TCCCGACGCA
GGCGACTACG ATGCGGCCGT CGAATGGGCC GGCATGCGCC CGGCCACGCC CACCGGCGTT
CCGCTGCTGG GCGCCACGGC GTATCGCAAC CTGTGGCTCA ACCTCGGCCA CGGCGCGCTG
GGTTTCACCC TGGCCTGCGG CAGCGGGCAG TTGCTCAGCG AGCTGATTGG CGAGCAGCGC
ACATCCATTG ATCTGCACGG GTTCAATCCC CGTGCGGCGT GA
|
|---|
| Protein sequence | MAQRVCIIGG GVIGLATAWA LVRDGFEVTV VEARQSLGSE TSFANGGQLS YRYVAPLADA
GVPLQAIGWM LRGDSPLKLR PRLDPAQWRW MASFLAACRT SVNRENAAHL LRLALFSQST
LKRWREDDGL VGFNWRRNGK LVTFRNAASF EHARNGLADP QQQQVLSATE CARLEPALAD
APFVGAIYTP DEEVGDCHGF CQQLAARLKA SGRCEFRLGQ AVTGIRHNHG AVTAIELGDE
TLPVEQLVIA AGHRSPLLAL PGLRLPLYPL KGYSLTVPIG SEHRAPDVSI TDYDRKIVYA
RIGEQLRVAA MVDIVGFDPA VDPERLALIK RQARGTFPDA GDYDAAVEWA GMRPATPTGV
PLLGATAYRN LWLNLGHGAL GFTLACGSGQ LLSELIGEQR TSIDLHGFNP RAA
|
|---|
| |