| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4392 |
|---|
| Symbol | |
|---|
| ID | 3712835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 4951358 |
|---|
| End bp | 4954210 |
|---|
| Gene Length | 2853 bp |
|---|
| Protein Length | 950 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | glycine dehydrogenase |
|---|
| Protein accession | YP_350120 |
|---|
| Protein GI | 77460613 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.142665 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAG TAAATCTCGG CACTGCCAAC GAATTCATCG CCCGTCACAT CGGCCCGCGC
GCCGGTGACG AGCAAGCCAT GCTCAACAGC CTCGGCTTCG ACTCGCTCGA AGCCCTGAGC
GCCAGCGTCA TCCCGGAAAG CATCAAGGGC ACCAGCGTGC TCGGTCTGGA CGACGGCCTG
AGCGAAGCCG ATGCCCTGGC AATGATCAAA GGCATCGCCG GCAAGAATCA ATTGTTCAAG
ACCTACATCG GCCAGGGTTA CTACAACTGC CACACGCCGT CGCCGATCCT GCGCAACCTG
CTGGAAAACC CGGCCTGGTA CACCGCTTAC ACTCCGTACC AGCCAGAAAT TTCTCAGGGC
CGTCTCGAAG CGCTGCTGAA CTTCCAGACC CTGATCAGCG ACCTCACCGG CCTGCCGATC
GCCAACGCTT CCCTGCTCGA CGAAGCTACC GCCGCTGCCG AAGCCATGAC CTTCTGCAAA
CGCCTGAGCA AGAACAAGGG CAGCCACCAG TTCTTCGCCT CGATCCACAG CCACACGCAA
ACTCTTGACG TGCTGCGCAC CCGTGCCGAG CCACTGGGCA TCGACGTGGT GGTGGGCGAT
GAGCGCGAAC TGACCGACGT GACGCCGTTC TTCGGCGCAC TGCTGCAATA CCCGGCCAGC
AACGGCGATG TGTTCGACTA CCGCGAACTG ACCGAACGCT TCCACGCTGC CAACGCACTG
GTCGCCGTGG CCGCTGACCT GCTGGCCCTG ACCCTGCTGA CTCCGCCGGG CGAATTCGGC
GCAGACGTGG CCATCGGCAG CGCGCAACGC TTCGGCGTGC CGCTGGGCTT CGGTGGCCCG
CACGCGGCTT ATTTCTCCAC CAAAGATGCG TTCAAGCGCG ACATGCCGGG CCGTCTGGTC
GGTGTTTCGG TTGACCGCTT CGGCAAGCCG GCCCTGCGTC TGGCGATGCA GACCCGCGAG
CAACACATCC GCCGCGAGAA AGCCACGTCG AACATCTGCA CCGCACAAGT GCTGCTGGCC
AACATCGCCA GCATGTATGC CGTGTATCAC GGCCCGAAAG GCCTGACCCA GATCGCCAAC
CGCGTGCATC ACCTGACCGC GATTCTGGCC AAGGGCCTGA GCGCACTGGG CGTGACCGTC
GAACAAACCA GCTTCTTCGA CACCCTGACC CTGGCCACCG GCGCACAAAC CGCCGCGCTG
CATGACAAGG CTCGCGCTCA ACAGATCAAC CTGCGTGTGA TCGACGCTCA GCGTCTGGGC
CTGTCGGTCG ACGAAACCAC CACCCAGGCC GACATCGAAA CCCTGTGGGG CCTGTTCGCC
GACGGCAAGA CTCTGCCGGA TTTCGCTGCG CTGGCCGCTG CCGCGCAAAG CACGATTCCG
GCTTCGCTGG TTCGTCAGTC GCCGATCCTC AGCCACCCGG TGTTCAACCG CTATCACTCG
GAAACCGAGC TGATGCGCTA CCTGCGCAAA CTGGCGGACA AGGATCTGGC GCTGGATCGC
ACCATGATCC CGCTGGGCTC GTGCACCATG AAACTCAACG CCGCCAGCGA AATGATCCCG
GTGACCTGGG CCGAATTCGG CGCCCTGCAC CCGTTCGCCC CGGCCGAGCA AAGCGCCGGT
TACCAGCAAC TGACCGACGA GCTGGAAGCA ATGCTCTGCG CCGCCACCGG TTACGACTCG
ATCTCGCTGC AACCGAACGC TGGTTCCCAG GGTGAGTACG CAGGTCTGCT GGCGATTCGC
GCCTATCACC AGAGCCGTGG CGAAGACCGT CGCGACATCT GCCTGATCCC GTCGTCCGCC
CACGGCACCA ACCCGGCGAC CGCCAACATG GCCGGCATGC GCGTGGTCGT GACCGCGTGC
GACGCCCGTG GCAACGTGGA CATCGAAGAC CTGCGCGCCA AGGCCATCGA GCACCGCGAA
CACCTCGCGG CGCTGATGAT CACCTACCCG TCGACCCACG GCGTGTTCGA AGAAGGCATC
CGCGAAATCT GCGGCATCAT TCATGACAAC GGCGGCCAGG TGTACATCGA CGGCGCCAAC
ATGAACGCGA TGGTCGGCCT CTGCGCACCG GGCAAGTTCG GCGGCGACGT CTCGCACCTG
AACCTGCACA AGACTTTCTG CATCCCGCAC GGCGGTGGCG GCCCGGGCGT CGGCCCGATC
GGCGTGAAAT CGCACCTGAC CCCGTTCCTG CCGGGCCACG GCCACATGGA ACGCAAGGAA
GGCGCGGTCT GCGCAGCACC GTTCGGCAGC GCGAGCATTC TGCCGATCAC CTGGATGTAC
ATTCGCATGA TGGGTGGCGC AGGCCTGAAG CGCGCTTCGC AACTGGCGAT CCTCAATGCC
AACTACATCT CCCGTCGCCT GGAAGAGCAC TACCCAGTGC TGTACACCGG CAGCAACGGT
CTGGTGGCGC ACGAGTGCAT CCTCGATCTG CGTCCCTTGA AAGACAGTAG CGGCATCAGC
GTCGATGACG TCGCCAAGCG TCTGATCGAC TTCGGTTTCC ACGCCCCGAC CATGTCGTTC
CCGGTGGCCG GCACGCTGAT GATCGAGCCG ACCGAAAGTG AATCCAAGGA AGAACTGGAC
CGTTTCTGCG ACGCCATGAT CCGCATCCGC GAAGAAATCC GCGCGGTGGA AAACGGCACG
CTGGACAAGG ACGACAACCC GCTGAAGAAC GCTCCGCACA CCGCAGCGGA ACTGGTCGGC
GAGTGGACTC ACCCGTACAG CCGCGAACAA GCGGTGTACC CGGTGGCGTC GTTGATCGAA
GGCAAGTACT GGCCGCCGGT CGGTCGCGTC GACAACGTGT TCGGCGACCG CAACCTGGTC
TGCGCCTGCC CGTCGATCGA AAGCTACGCT TAA
|
|---|
| Protein sequence | MTQVNLGTAN EFIARHIGPR AGDEQAMLNS LGFDSLEALS ASVIPESIKG TSVLGLDDGL
SEADALAMIK GIAGKNQLFK TYIGQGYYNC HTPSPILRNL LENPAWYTAY TPYQPEISQG
RLEALLNFQT LISDLTGLPI ANASLLDEAT AAAEAMTFCK RLSKNKGSHQ FFASIHSHTQ
TLDVLRTRAE PLGIDVVVGD ERELTDVTPF FGALLQYPAS NGDVFDYREL TERFHAANAL
VAVAADLLAL TLLTPPGEFG ADVAIGSAQR FGVPLGFGGP HAAYFSTKDA FKRDMPGRLV
GVSVDRFGKP ALRLAMQTRE QHIRREKATS NICTAQVLLA NIASMYAVYH GPKGLTQIAN
RVHHLTAILA KGLSALGVTV EQTSFFDTLT LATGAQTAAL HDKARAQQIN LRVIDAQRLG
LSVDETTTQA DIETLWGLFA DGKTLPDFAA LAAAAQSTIP ASLVRQSPIL SHPVFNRYHS
ETELMRYLRK LADKDLALDR TMIPLGSCTM KLNAASEMIP VTWAEFGALH PFAPAEQSAG
YQQLTDELEA MLCAATGYDS ISLQPNAGSQ GEYAGLLAIR AYHQSRGEDR RDICLIPSSA
HGTNPATANM AGMRVVVTAC DARGNVDIED LRAKAIEHRE HLAALMITYP STHGVFEEGI
REICGIIHDN GGQVYIDGAN MNAMVGLCAP GKFGGDVSHL NLHKTFCIPH GGGGPGVGPI
GVKSHLTPFL PGHGHMERKE GAVCAAPFGS ASILPITWMY IRMMGGAGLK RASQLAILNA
NYISRRLEEH YPVLYTGSNG LVAHECILDL RPLKDSSGIS VDDVAKRLID FGFHAPTMSF
PVAGTLMIEP TESESKEELD RFCDAMIRIR EEIRAVENGT LDKDDNPLKN APHTAAELVG
EWTHPYSREQ AVYPVASLIE GKYWPPVGRV DNVFGDRNLV CACPSIESYA
|
|---|
| |