| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4211 |
|---|
| Symbol | |
|---|
| ID | 3717631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 4752537 |
|---|
| End bp | 4754438 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | |
|---|
| Product | periplasmic sensor hybrid histidine kinase |
|---|
| Protein accession | YP_349939 |
|---|
| Protein GI | 77460432 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.79688 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.233659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTCC GCCGTTGGGA CATCAACACC CGCACCCAGT TGATCAGCCT GGGCCCTGCG
CTGTTGCTGA CCTTGCTGCT GATCAGCTTT TTCACCTTTG TGCGCATTCA GGATTTGCGT
CAGGAGCTGA ACCACACCGG CCAACTGATC GCCAACCAGC TCGCACCGGC CACCGAGTAC
GGGGTGATTT CCGGCAACAA CGAAGTGCTG GAAAGCCTGC TCAAGGCCAC GCTGGCCACG
CCGAACGTGC GGTTTCTGGA AGTGCAGGAC AGCGCCAATC GGATTCTCTC TTACGTCGAA
CAGCCGGCGG ATGCGCACAA TCGTCCGCAT CAGGTCGAAG TGTTCCAGGC GCCGGTGCGG
CTGCAACGCA TCGCCTTGCA CAACGATTTC TTTCAGGACG GCAAGAGCAG CCCCGGCGTG
GCCAGCGAGG ACTATCTGGG ACGGGTGATC GTCGGTCTGT CGAATGACGC GTTCAGTCAG
CGCCAACAGG AAATTTTGCT CAAGGCCGGG ATTCTCGCGT TGTTCGCCCT GCTCTTCACG
TTCGTCCTGG CGCGGCGGCT GGCCGGCAGT CTGTCGCAGC CGATTCGCGA CATCGGCAAT
GCGGTCAAGG CGATTCAGGA CGGCGATTAC AAGACCCCAC TGCCGATTGT AGACGACACC
GAACTGGGCG CCCTGTCCCA GCACATCAAC AACCTGGCCC AGGCGCTGGA ACAGGCCAGC
CGCGAGCAGC ATCAGGCGAT GGCGCAACTG ATCCAGACCC GCGAAGAGGC CGAGAAAGCC
AACAACGCGA AATCGGATTT CCTGGCGATG ATGAGCCATG AACTGCGCAC CCCGATGAAC
GGTGTGCTGG GCATGCTGCA ATTGCTCGAA ACCACCGACA TGACTGAGGA GCAGGTCGAG
TACGCGGCGC TGGCTTCCGA GTCCACCGAG CATTTGCTCA AGGTGATCAA CGACATTCTG
GATTTCTCGC GCATCGAGCG TTCGGAACTG GAGCTGGAGC ACATTCCGTT CAACCTCGCC
GAAGTGATCG GCGCCTGCGC CCAGTCGTTC CAGCACAGCG CGGCGCAACG CGGGTTGGCC
CTGCAGCTGC GAATCCCCGA AGACTTGCGC GACTTGCAGG TCCAGGGCGA TCCGACGCGG
ATCCGGCAGA TTCTGGTCAA CCTGGTCGGC AATGCCTTGA AGTTCACCGA ACAGGGACGC
GTCAGCATCG AGGCGCAGTG GCAGTCGCTG GATCACGAGT TGCTGTGGTT CACCTGTGCG
GTGCGTGACA GTGGCATCGG TATTTCGCCG GAGAGCCTGG AGCTGATGTT CAACGCGTTC
CAGCAGGCTG ACAGTTCGAT TTCCCGTCGT TATGGCGGCA CCGGCCTGGG CCTGCCGATT
GCCCGCACGC TCGCCGAACG GATGGGCGGC ACCTTGCGCG CCCAGAGTGA AGAAGGTCGC
GGCTCGGTGT TCACCCTGGA AATACCACTG GCCCTATATA AGCAGGCGCT GCCCGCGCTT
GCCGCACCGC GCACATTGAA CGGTGCAAGT CACGGCGAAG GCCGAAATGT GCTGCTGGTC
GAGGACAACC CGGTCAACCA GACGGTGATC GAAGCGATGC TGCGCAGCCT GGGCTTTACC
GTCAGCGTCG CCACCGATGG CGTGCAGGCG GTGCGCAGTG CCGGGGACAA CCGTTTCGAA
GCGATTCTGA TGGATTGCCG CTTGCCGCTG ATCGACGGTT ACGAAGCGAC CCGGCGGATC
CGGCAGCTGC CCGGCTGCGG CCAGGTGCCG ATCATCGCCC TGACCGCCAA TGCTTTACAG
GGCGACCGGG AAAACTGCCT CGCGGCGGGC ATGAACGATT ACCTGGCCAA GCCATTCAAA
CACAATGATC TGCAGCAGAT TCTGCAGCGA TGGGTGCAGT AA
|
|---|
| Protein sequence | MIFRRWDINT RTQLISLGPA LLLTLLLISF FTFVRIQDLR QELNHTGQLI ANQLAPATEY
GVISGNNEVL ESLLKATLAT PNVRFLEVQD SANRILSYVE QPADAHNRPH QVEVFQAPVR
LQRIALHNDF FQDGKSSPGV ASEDYLGRVI VGLSNDAFSQ RQQEILLKAG ILALFALLFT
FVLARRLAGS LSQPIRDIGN AVKAIQDGDY KTPLPIVDDT ELGALSQHIN NLAQALEQAS
REQHQAMAQL IQTREEAEKA NNAKSDFLAM MSHELRTPMN GVLGMLQLLE TTDMTEEQVE
YAALASESTE HLLKVINDIL DFSRIERSEL ELEHIPFNLA EVIGACAQSF QHSAAQRGLA
LQLRIPEDLR DLQVQGDPTR IRQILVNLVG NALKFTEQGR VSIEAQWQSL DHELLWFTCA
VRDSGIGISP ESLELMFNAF QQADSSISRR YGGTGLGLPI ARTLAERMGG TLRAQSEEGR
GSVFTLEIPL ALYKQALPAL AAPRTLNGAS HGEGRNVLLV EDNPVNQTVI EAMLRSLGFT
VSVATDGVQA VRSAGDNRFE AILMDCRLPL IDGYEATRRI RQLPGCGQVP IIALTANALQ
GDRENCLAAG MNDYLAKPFK HNDLQQILQR WVQ
|
|---|
| |