| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3816 |
|---|
| Symbol | |
|---|
| ID | 3714844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 4316592 |
|---|
| End bp | 4317614 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | transposase IS116/IS110/IS902 |
|---|
| Protein accession | YP_349545 |
|---|
| Protein GI | 77460038 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.531906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.5614 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCT TGAACTTGCT CGGCCTGGAT ATTGGGAAAA GCACCTTTCA TCTTGTAGGG
CACGACGTTA AAGGCAAGGA AGTGTTGCGC AAGAAATTCA ATCGCAACCG CTTGCTCGAG
TTCGCAGCAA GGCTGAAGCC CTGCACCATA GCGATGGAGT CTTGTGGCGG TTCACACTGG
CTTGCCAGAA AGCTCTTGTC TTTCGGTCAT CAAGTGAAAT TGATTGCGCC GCAGCATGTA
AAACCTTACG TCACCGGCAA CAAGAACGAC TACATCGACG CTGAGGCAAT TTGCGAAGCC
GCATCTCGCC CTAAAACACG TTACGTCGCC ATCAAAACCG TTGAACAGCA GGTGCTATCA
ACCCAGCACC GCCTTCGTGA GGCGTTGGTA GGACACCGTA CTCAAACGAT CAATCGCATT
CACGGGTTCT TGCTTGAGTT CGGGATCGAA CTGCCTGCAA CAAAAGCGGC TATGAATCAA
GTTCATCAAA TTCTGGATGA CCCTGCCGCC GAGTTACCGC AACAGCTGAA GTCTTTTATT
GAACATCTAC TGGAAGAGAT GAAGCGGCTC AACGACGAGA TTAAGGCGAT TGACCGGAGT
ATCAAGGAGC AAGTGGACAC TGATGACGCG GGAACACGCC TGATGAGCAT CCCCGGCATC
GGCCCGATCA TCGCTAGCGC GCTGCTGGCC GACGTCGGCG ACGCTTCCAA TTTTCACTCA
TCGCGAGACT TCGCCGCTTC GCTGGGACTG GTGCCAAGGC AATATTCAAC AGGCGACCAA
ACCGTCCTTT TGAACATCAG CAAGCGTGGT GATAAATACC TTCGAAAGCT TATGATTCAA
GGCTCGCGTG CAGTTCTGGT GCACATAGAT AAACGTACCG ATGCTTTGGG AACCTGGTGC
AGAGACCTGC TGATACGAAA GCACCCGAAT AAAGTCGCCT GCGCTTTGGC CAATAAATTG
GCAAGGATCG TATGGGCTGT TTTAGCTCGC GGAGGTAGCT ACAACGCACA ATCCATGGCT
TGA
|
|---|
| Protein sequence | MDTLNLLGLD IGKSTFHLVG HDVKGKEVLR KKFNRNRLLE FAARLKPCTI AMESCGGSHW
LARKLLSFGH QVKLIAPQHV KPYVTGNKND YIDAEAICEA ASRPKTRYVA IKTVEQQVLS
TQHRLREALV GHRTQTINRI HGFLLEFGIE LPATKAAMNQ VHQILDDPAA ELPQQLKSFI
EHLLEEMKRL NDEIKAIDRS IKEQVDTDDA GTRLMSIPGI GPIIASALLA DVGDASNFHS
SRDFAASLGL VPRQYSTGDQ TVLLNISKRG DKYLRKLMIQ GSRAVLVHID KRTDALGTWC
RDLLIRKHPN KVACALANKL ARIVWAVLAR GGSYNAQSMA
|
|---|
| |