| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3793 |
|---|
| Symbol | |
|---|
| ID | 3714763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 4294488 |
|---|
| End bp | 4295609 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_349522 |
|---|
| Protein GI | 77460015 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.167137 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.620261 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCA TGCCCACCGT AGAACCCGAT CTCGCCGTTC CGGTCAGCGC CCCCAAACCT
CCCCTGCTCA AACGCCTGCT GTTGCCCACT GCGGGTTTGG CCGCGCTGGT GCTCGCCGGC
CTGTATGCCG TGCATTGGTG GGGCACGGGG CGATTTCTCG AGGAAACCGA CGATGCCTAC
ATCGGCGGCG ACGTCACGGT GATCGGGCCG AAAGTCGCCG GTTACATCGA AGAAGTGCTG
GTCAGCGACA ACCAGAAGGT GAAGGCCGGC GACGTGCTGA TCCGCCTCGA CGCCCGCGAC
TACCGCGCCA ATCTGGCCAA GGCCGAAGGC GCGGTTGCCG CCGAGGAAGC GCTGCTGGCC
AACCTCGACG CCACCGAACA ATTGCAGCAA GCGGTGATCG GTCAGGCCCG CGCCGGGATC
GATGCTGCCA GCGCCGAAAC CGCACGTTCG CGAGATGACA ACGCGCGCTA TAAACGTCTG
GTGACCACCA ACGCGGTCTC GGTAGAAAGC GCGCAACGGG CCGACGCCAC CTTCAAGACC
GCACAAGCCT TGAGCGCCAA GGCCCAGGCT GAACTGCTGG CCGCGCAGCG CCAGCTCACC
GTGATCGAAA CCCAGAAACA ACAGGCCCGC GCCGCCCTCC AGCAAGCCCG GGCCGAACGG
GATCTGGCGC AACTCAACCT CGGCTATACC GAGCTGCGCG CCCCGGTCGA CGGCGTGATC
GGCAACCGCC GCGCGCGGGT CGGCGCCTAT GCACAGGCCG GTTCGCAACA GTTATCGGTA
GTGCCGGCCA GCGGTCTGTG GGTCGATGCC AATTTCAAGG AAGATCAACT GGCGCGAATG
AAACCCGGCC AGCGCGTGAG CATCCGTGCC GACGTGTTGT CCGGCCAGGA ATTCCACGGC
CGCCTCGACA GTCTCGCCCC GGCCAGCGGC TCGCAATTCA GCGTACTGCC GCCGGAAAAC
GCCACCGGCA ACTTCACCAA GATCGTTCAG CGGGTGCCGG TGCGGATCCT GCTCGACCCG
GCGGACGGCG TGCTCGGCCA TCTGCGTCCC GGCCTGTCGG TGACCGCTGA AGTCGACACC
CGCGCCCAAC CTGAAACCAC TGCCGTGGCC AGCGCGCCAT GA
|
|---|
| Protein sequence | MTSMPTVEPD LAVPVSAPKP PLLKRLLLPT AGLAALVLAG LYAVHWWGTG RFLEETDDAY
IGGDVTVIGP KVAGYIEEVL VSDNQKVKAG DVLIRLDARD YRANLAKAEG AVAAEEALLA
NLDATEQLQQ AVIGQARAGI DAASAETARS RDDNARYKRL VTTNAVSVES AQRADATFKT
AQALSAKAQA ELLAAQRQLT VIETQKQQAR AALQQARAER DLAQLNLGYT ELRAPVDGVI
GNRRARVGAY AQAGSQQLSV VPASGLWVDA NFKEDQLARM KPGQRVSIRA DVLSGQEFHG
RLDSLAPASG SQFSVLPPEN ATGNFTKIVQ RVPVRILLDP ADGVLGHLRP GLSVTAEVDT
RAQPETTAVA SAP
|
|---|
| |