Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_3480 |
Symbol | |
ID | 3713663 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 3962384 |
End bp | 3963982 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | recombinase |
Protein accession | YP_349209 |
Protein GI | 77459702 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000000373145 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0098808 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAACAAG CGATTTCCTA CGTTCGATTC TCCAGCGATA GGCAGCGTCA CGGTTCGAGC GTTGAACGTC AAGAAGGCAT GATTGCTGAT TGGCTCAAAC GGCATCCCGA TTACGAGATG TCAGACCTGA AGTTTTCCGA CCTAGGCAAG AGCGGTTATC ACGGGGAACA CATCAAAGAG GCTGGCGGGT TTGGAAAGCT CCTGAAAGCG TTGGAGGATG GTTTCATCAG GGCTGGTGAC GTGGTGCTGG TTGAGGCCAT AGACCGCACA GGACGCCTTG AACCAATGGA CATGCTGACG TTGGTTATCA ATCCGATCCT GAAGGCTGGT GTCTCAATCA TCACTCTGGA TGACAACACA ACGTACTCCA AGGAATCCGT TAACACTGCT CAGATATTCC TGTTGGTGGC GAAGATTCAA GCTGCTCACG GCTATTCAGC AGCACTCTCA ACCCGCGTTG CCGACTCTTA CAAGAAGCGT AGAAAGGACG CTGCTAAATA CGGGATCGTC CCTAGACGCA TCACCCCTGT ATGGCTGAAC CCTGACGGTA CGGTGAGGGA GGATGTAGCG CCATGGATCA AGACAGCCTT TGAGCTGTAC GTTTCTGGTG TAGGCAAATC GACAATTGCC AAGCGTATGC GTGAAAGCGG CGTTGAAAGA CTGGCTAAGG CTTCTGGCCC CGGCGTTGAA GGTTGGCTTA GGAACAAGGC TGTGATTGGC AAGTGGGAGA CGTTAGAAGG CACTCCAGAC CATCAAATCA TTGATGACAT CTACCCTGCG ATCATTGAAC CATCGTTGTT CTACAAAGCT CAGGTTCACG CTGAGAAGAT GAAGACACAA CGCCCAATCA AGACAGCAAG CCATTTTCTA GTTGGGCTTG TGAGGTGTGG TGAGTGCGGT AAGAACTACA TCGTGCAGAA TCTACACGGT AAGCCTCACA GCATGCGTTG CCGTACACGA CAGAGCCAGA ACGAATGCAC AAACTCTCAC TGTGTACCTA AACCTGTCCT AGATGCTATC TACAGGTATA CATCTGTCAC AGCAGCTATA GAGGCCGTGC AGCAGCAACA GATGGGCGTC AATGACAAAG AGATTGTCAC AAGAGAAGCT GAGCTACTGG CAATCACCAA GCGCGTTGAT GGCCTTGTAC AAGCCCTTAC ACAGACTGGC CCTATACCAG AGGTCATAGA GGCACTTAAA CAGTCTAGAA TCGAGCGTGA GGCGGCTGAA AGTGCATTAG TGATACTAAG GTCTACGGTT GTTCCTTCCG CCGGTACACA TTGGCAGGAA ATGGGGAAGG TGTGGAAACT TGAAGCTGCT GATGCACAGC GCCTAGCAGC TATGCTTAAG TTGGTTGACT ATCACATCAC CGTAGCACCT ACAGGCGAGA TTACAGCGTC ACATTCTGAA GTGCTGTACA GATACATTGG TGTTGATCGT GCTCTTGACA AATACAAGCT TCTAGCTAAT GGAAAGCTTA TGCTGATCCC TAAAGGGTAC GTTGACGACT TCCCTTATCA TGAGCCATTT CAAGAGATGC AGTCGGAAAA CACATGGGAT GAAGCTGACT ATGACAATCT ACGTCAACAG CACCAATGA
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Protein sequence | MKQAISYVRF SSDRQRHGSS VERQEGMIAD WLKRHPDYEM SDLKFSDLGK SGYHGEHIKE AGGFGKLLKA LEDGFIRAGD VVLVEAIDRT GRLEPMDMLT LVINPILKAG VSIITLDDNT TYSKESVNTA QIFLLVAKIQ AAHGYSAALS TRVADSYKKR RKDAAKYGIV PRRITPVWLN PDGTVREDVA PWIKTAFELY VSGVGKSTIA KRMRESGVER LAKASGPGVE GWLRNKAVIG KWETLEGTPD HQIIDDIYPA IIEPSLFYKA QVHAEKMKTQ RPIKTASHFL VGLVRCGECG KNYIVQNLHG KPHSMRCRTR QSQNECTNSH CVPKPVLDAI YRYTSVTAAI EAVQQQQMGV NDKEIVTREA ELLAITKRVD GLVQALTQTG PIPEVIEALK QSRIEREAAE SALVILRSTV VPSAGTHWQE MGKVWKLEAA DAQRLAAMLK LVDYHITVAP TGEITASHSE VLYRYIGVDR ALDKYKLLAN GKLMLIPKGY VDDFPYHEPF QEMQSENTWD EADYDNLRQQ HQ
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