| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3124 |
|---|
| Symbol | |
|---|
| ID | 3712811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 3584962 |
|---|
| End bp | 3587883 |
|---|
| Gene Length | 2922 bp |
|---|
| Protein Length | 973 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_348853 |
|---|
| Protein GI | 77459346 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.308275 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTCAT TCAAACAACA ATTATCCCGC CTGACACTGG CCATCTTGTT GGCGACGGGC
ATTGTCCCGG CCTCCGTTCT GGCACAAGAC GCCGCCACAC AGGTGTTTAC CTTCGACATT
GCCGCCGGGG CCCTGGACGA GGTGCTGCTG GACATCTCGC GCCAGACTGG CGTGCCGATT
TCCTTCAGTC AGAATCTGGT TCAGGGCAAG CGCAGCAGTG CGGTGCGCGG CGCATTGGGT
GGCCGCCAGG CGGTGGAGAA GGCCTTGCTC GGCAGTGGTC TGCAAGTCGA GCAGGGCACT
CAGGGTCTGA GCATTCGTCA GGCCGATGCG CCGAACGCCG CGCCCGTGAA AGCCGCCGCT
GTGGCGCCCG CCAGCAGCGC CGATTACCGC ATGGAAAAAG TCACCGTCAC CGGCTCGCGC
ATCGCCCGCG CCCAGAGCGA TGGTGCGACC CCGGTCAATG TCATCACCCA CGAAGAAATG
GAAGCGCGCG GCTACAAGAA CGTCTACGAC GCCCTCGCCA CGCAAACCCA GAACACCGGC
ATGACCCAGG GCGAAGACTA CGGCAACACC TGGCAACCGG CCGCCAGCGC ACTCAACCTG
CGCGGCCTCG GTCCCAATCA CACGCTGGTG CTGATCAACG GCCGGCGGGT CGCCGATTAC
CCGACGCCGT ATGACGGCAA GGTCAACTTC ACCAACCTGG CGAACATTCC ATCGGCGATC
ATCGAGCGCA TCGAAGTGCT CAGCAGCGGC GCCTCGGCGA TCTACGGTTC TGACGCGATT
GCCGGGGTAG TGAACATCAT CCTCAAAGAC AAAATGAATG GCGTCGACGT CAATCTCAAG
GGCGGCACCA GCGAGCGCGG CGGCGGTGAC AACCAGCGCT TGCAGATCAG CGGCGGCGGC
AGTTGGGGCG ACTTCGACGG TTTGTTCGGA CTCGAACTGA CCCACCGCGA TCCGATCTGG
GCCGATGATC GCGGCTTCAT GCAGAGCGGG CCCCTGGCGG ATGTCGGCTA CCGGCGCGAC
CTGACCAACA ACCGCTATCT GGGACCCGGC TGCGGCGCCT ATCAGGGCAC GTTCGACAAC
AAACTGTTCA ACAGCGGCGG ACGTTGCCGC ACCGACCAGA TGTACAACGA TTACTGGACG
GTGCAGACGC AAAAGGAAAA CTACGACGGC TACACCCGTG GCACCTGGCA TTTCAGCGAC
AGTGGTCAGG TCTTCGCCGA CCTGATGTAC GGCCTCGATC ACATCCAGAA CAACACACGC
GGCCCGAGCT TCACCTCGCC GGACTTCATC AACCAGAACA GCGGCAATCT GGAGCGCTGG
TACCGCCGCT TCGGCGAAGA GGAAATCGGC GGACGCACCA GCAACAACAG CAAGTGGCGC
GATACCTCAT GGACCGGCAC CTTGGGCCTC TCGGACAAGA TCGCCGACAC CGGGTGGAAC
TATGAACTGG CAGCCAACCG GTCTGAATAT AAAAGCGTGC GCACCACGCG TTACACGCCG
CTTTCGTCGA TCCAGGATTT CTACCTCGGC CCGCAGCTGG GCACCCGCGA CGGTTATCCG
GTGTTCGCGC CGGATGCTTC GCGCCTCGAC CGGCCACTGA CAACCCTGGA GTGGGAGCAG
TTTCGCGGCA ACCTGACGCA GAACAGCAAG TCGGTTTCCA CCAGTTACAA CGCGTCGGTC
AACGGCGAGT TGTTTGACCT GCCCGCCGGT CCGGTGGGAT TCGCCGGCGT GCTGGAGGCG
GGCAAGCAGG AATATCGTAT CGACCCGGAT GACAGCCTCA ACGACGGCAG TTTCTATGGC
GTGACGCCTG CGCAAAGCTC CGGCGGCTCG CGCAAGCGTT ATGCGGCCGG TGGCGAGTTC
AGCATTCCGG TCACCGACAC GGTGCTGGCG ACAGCGGCAG GGCGCTGGGA CCAATACAAA
TTCAGCGGCC GCACCGAGCA GCAGAAGACC TACAACCTTG GCCTGGAATG GCGGCCGGTA
ACCAGCCTGT TGGTGCGCGG CAGCTACGGC ACCAGTTTCC GCGCCCCGGA CCTGAACTAC
ATCTATCAGT CCGACAGCAA CGGCTACTAC CCGGCGCAGA TCGACTATTA CGGTTGCAGC
CAGGGCGTGG AGGGCGCCTG TGATCGCGGG CGGGTCGATT ACACCCAGAG CGGCACGGCG
GATCTGGAAT CCGAACGCGG CAAATCCTGG ACCTACGGTT TCGTCTGGTC ACCGTCGCGC
AACTTTGACT TCTCGACGGA TTTCTGGCGA GTCGAGATCG ATGACCTTCT GACCACCGTC
GACGAAAACC GTCTGCTGCA GCAAGAGAAC GAATGCCGCA ATGGCACCCA GGACATCAAC
TCGGCCAACT GCCAGTCGAC CCTGGCGCGG GTCGATCGCA ATCCCGGCAA TGCGGCCGTC
GATCCCAATC AGTTGCAGCG GGTGCGGGTG AATGCGATCA ACGCCGCCAG CGAGCGGGTC
AGTGGCCTGG ACTTCAAGAG CAACATCCGC TGGGGCGCCG GGCAGTACGG TGCGTTCAGT
TCGGCGCTGG GCTACACCCT GGTGCTCTCG CATTACTACA AGGAATCGGA CGAAGCCCCG
ACCCAGGACT GGCGCACCTC GCGTACCAAC TACGACTGGC GCAGCAAGGT CAACGCCAGC
CTGACCTGGG ATTACCAGAA GGCCACGGCA ACATTGATGG GGATTCGCTA CGGCTCGGTC
ACCAACGGCG CGGGCGACGG GCGTCTGTCG CCGTGGACGG TGTTCAACGC CAGTGCACGC
TACAAGCTCA ACGACCGGGC AAGCGTCGGG CTGACCGTGA ACAACGTGCT CAACCAGGTC
AAGCATGACG ACTCGGCGGG GTGGCCTTAT TACCCGACCG GTAACTACGA CCCGTACGGG
CGCCAGTGGT GGCTGGATGT GAGTTATCAC TTCGGGAGTT GA
|
|---|
| Protein sequence | MFSFKQQLSR LTLAILLATG IVPASVLAQD AATQVFTFDI AAGALDEVLL DISRQTGVPI
SFSQNLVQGK RSSAVRGALG GRQAVEKALL GSGLQVEQGT QGLSIRQADA PNAAPVKAAA
VAPASSADYR MEKVTVTGSR IARAQSDGAT PVNVITHEEM EARGYKNVYD ALATQTQNTG
MTQGEDYGNT WQPAASALNL RGLGPNHTLV LINGRRVADY PTPYDGKVNF TNLANIPSAI
IERIEVLSSG ASAIYGSDAI AGVVNIILKD KMNGVDVNLK GGTSERGGGD NQRLQISGGG
SWGDFDGLFG LELTHRDPIW ADDRGFMQSG PLADVGYRRD LTNNRYLGPG CGAYQGTFDN
KLFNSGGRCR TDQMYNDYWT VQTQKENYDG YTRGTWHFSD SGQVFADLMY GLDHIQNNTR
GPSFTSPDFI NQNSGNLERW YRRFGEEEIG GRTSNNSKWR DTSWTGTLGL SDKIADTGWN
YELAANRSEY KSVRTTRYTP LSSIQDFYLG PQLGTRDGYP VFAPDASRLD RPLTTLEWEQ
FRGNLTQNSK SVSTSYNASV NGELFDLPAG PVGFAGVLEA GKQEYRIDPD DSLNDGSFYG
VTPAQSSGGS RKRYAAGGEF SIPVTDTVLA TAAGRWDQYK FSGRTEQQKT YNLGLEWRPV
TSLLVRGSYG TSFRAPDLNY IYQSDSNGYY PAQIDYYGCS QGVEGACDRG RVDYTQSGTA
DLESERGKSW TYGFVWSPSR NFDFSTDFWR VEIDDLLTTV DENRLLQQEN ECRNGTQDIN
SANCQSTLAR VDRNPGNAAV DPNQLQRVRV NAINAASERV SGLDFKSNIR WGAGQYGAFS
SALGYTLVLS HYYKESDEAP TQDWRTSRTN YDWRSKVNAS LTWDYQKATA TLMGIRYGSV
TNGAGDGRLS PWTVFNASAR YKLNDRASVG LTVNNVLNQV KHDDSAGWPY YPTGNYDPYG
RQWWLDVSYH FGS
|
|---|
| |