Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_0480 |
Symbol | |
ID | 3713237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 555573 |
End bp | 557435 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | |
Product | O-antigen polymerase |
Protein accession | YP_346213 |
Protein GI | 77456708 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.450132 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATTCA GCGGCTTCAG CAGTACGTCC AGTCGAATTT TCGATTTCAT CAGCCTGTGG ATTCTTCCCG TCGGCTACTT CCTGCTCTTG TGCGCGCTGT TCTTCCTGCC GGGCCGCAGC CTTCATCACA AGCTGTTTTA CGGCCTGTTC AGCATTCCGA CGCTGATCGC CCTGTGCCTG CGCCCGCGTG AACTCAAGGA AATGCTGCGT GAACCGGTGT TCATCGCACT GCTGCTGTTT GCCGGCTGGG CGTTACTCAG TCTTTGCTGG GGTCCGCAGG ATGAACCGAT AGGCGGCATG TTCAAACCTC CGTTGCATAC CCTGATGCTG TTCGCCGGGT GTTTTCTGCT GGTCCGCTAC CGCAGCGACA TCCTGACCCC GTTGCTGTTC GCCGCCGCAC TGGTGGCCCT GATCGCAACG ATCGCCTTCC TGATTCCGTT CATGCTCCAC TTCGAACCCG GCGCGCGCCT GATCGGCGGC GGCGCGTTCG ACAACCCGCT GCTCAGCTCC CATCTGTTCG GATTTTTCTG CGCCTACTGG CTCAGTCTGA GCATGACCTG CAAGAATCGC CGGCTGTACT GGCTCAGCAT CCCTGCGATG CTGATCATGT TCATGGCCGT GATCGGAACC GGTTCCCGCA CTCCGCTGGT GGCGCTGACC ATGGCCGCAT TGTGGCTCAG CCTGATTTGC TGGAACCGTC GCTCACTGGT ACTGCTGGGC ACACTCGCGA TCGGTGGCGC AACGGTGGTG GTGCTGTTCT CGAAAATGAT CATCGAACGC GGTGACTCCT ATCGTTTCGA GATCTGGCAG CAAGCCCTGG AAAAAATCGC CGAGCATCCG TGGATCGGCC ACGGTTACAA CGCGGTTCTG GCGATTGACC CAGGCGTCGG TTACAACTTC CAGGAACCGC ACAGCTTTGC GCTGGGAGTG CTTTATTACG TCGGCATCCT CGGCATGCTG CCCTGGCTGT TTTTCCAGGC CTGGGGGCTG CTGAGCAGCT GGCGTCAGCG CGTGCAGCCA TTGCTGATCA TCGCCTCGAC CTGGCTGGTG TTCGGCATCG GTGCCGGGCT GACCGAAGGC GGCGGAATCA TTTCCCGCCC CAAGGAACAC TGGTTCCTGC TGTGGATTCC TTTGGCGCTG ATTGCGGCCC TGAGCATCAA TCAACGTGCC CGACGGCTTT TGGCAATGCC GGTACAAAAG CTGTCGGCAA CCGCTCTGCA ACAGCTGAGC AGCGACGCCC AGGTCATCGA GGAAGATGGA TTGGGGCCCA AGGTCCTGCG CCTGTCCGAT GGCAGTTTCC TCAAACTGTT TCGCCATCGC CGCTGGTATA CATCGGGCAG CTTCAACCCG TATTCCGAGC GGTTTGCCGT CAACAGCGAA CAGCTGCGCC GGATGGGCAT TCCCACGCCA CAGGTGCTCA ACCTCTATCG CCTCGACGAC GGCAGCAGCG CCGTGCATTA CACGCCGCTG CCGGGCCACA CCCTGCGCCA GGTGCTGCAG GGGATCACCG CGCCTGCAGT GCGTCATGCG CTGGTGGAGC GTTTCGGCAA ATTCATGGCC AGCCTGCATG AGCAAGGCGT GTATTTCCGC TCGCTGCATC TGGGCAATGT GCTGGTGCTG GAAGACGGAG AGTTCGGGCT GATCGATCTG GCCGACCTGC GGATCTACCC TTCCCCCCTC AGCCTGTCAC TGCGCCAGCG TAATCTGCGC CACATGCAAC GCTACACCGT CGACAGACGC TGGCTGTTCG AGGATCACCT CGAGGCACTG CTCCAGGGAT ACGCCGTAAC GGCGTCGAAA TCCGCCGTAG ACAATCTGCA CAGGCAAGTG CTGGCCGGCA ACACGCCGGC TAGGGTTCAT TGA
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Protein sequence | MQFSGFSSTS SRIFDFISLW ILPVGYFLLL CALFFLPGRS LHHKLFYGLF SIPTLIALCL RPRELKEMLR EPVFIALLLF AGWALLSLCW GPQDEPIGGM FKPPLHTLML FAGCFLLVRY RSDILTPLLF AAALVALIAT IAFLIPFMLH FEPGARLIGG GAFDNPLLSS HLFGFFCAYW LSLSMTCKNR RLYWLSIPAM LIMFMAVIGT GSRTPLVALT MAALWLSLIC WNRRSLVLLG TLAIGGATVV VLFSKMIIER GDSYRFEIWQ QALEKIAEHP WIGHGYNAVL AIDPGVGYNF QEPHSFALGV LYYVGILGML PWLFFQAWGL LSSWRQRVQP LLIIASTWLV FGIGAGLTEG GGIISRPKEH WFLLWIPLAL IAALSINQRA RRLLAMPVQK LSATALQQLS SDAQVIEEDG LGPKVLRLSD GSFLKLFRHR RWYTSGSFNP YSERFAVNSE QLRRMGIPTP QVLNLYRLDD GSSAVHYTPL PGHTLRQVLQ GITAPAVRHA LVERFGKFMA SLHEQGVYFR SLHLGNVLVL EDGEFGLIDL ADLRIYPSPL SLSLRQRNLR HMQRYTVDRR WLFEDHLEAL LQGYAVTASK SAVDNLHRQV LAGNTPARVH
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