| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2383 |
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| Symbol | |
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| ID | 8530784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium wasabiae WPP163 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013421 |
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| Strand | + |
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| Start bp | 2584279 |
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| End bp | 2586726 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | |
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| Product | Virulence effector, SrfC |
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| Protein accession | YP_003259759 |
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| Protein GI | 261821653 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.971346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGAT TAACGCCTAA ACAGCTTTCC ACTCGGCTTC ACGGCCAGCT CCAGGCCGTC
ACTCACGGTG TTGAACAGGC CATTGACTGG GTTGAAACTA CGCGTCAGAA CGCCCCGCGT
CTGGATATTG AGGCAGACCG CCTGATCGTC AAATTGCGTC GTAATCATAA TAAAGCGCAG
CACCTGTCCG ATGTGGCACA GAAAGAGATT GCCATCGGCT TTTTTGGCCT GTCTCAGGCG
GGGAAAAGCT ATCTTATCGC GTCGCTGGCC GGGGGAGAAA ACGGCAAGTT AGAAACCTCA
TTTGAAGGGC AACCGCTGGA TTATATCGAT CATATTAACC CGTCTGACCG GGTCGCCGCG
CTTGTCACGC GCTTTAGCCG ACAGTCTGGC GTGAAGAACA AATCGTTTCC CGTGCAGTTG
CAACTTCTCA ACGAGCTGGA TATCGGCAAG ATCATGGCCA ACGCATTTTT GAACGATCTC
AACCAAGAGA CAACGTTTGA AGAATTGGAT GAACGCCATG TCGCCGAGCA CATTAAAACG
CTGTTGATGC ACCGTCAGCC AGAACCTGTC GAAGGGATGG ACCGCGATGA CGTGGTCGAA
CTCTGGGATT ATCTCGCACG TCACGATATC AAACGGCAGA AACAGTTAGA GGCACACTTC
TGGCCTGTTG CAATTGAATT AGCACCCTAT CTCGCCGTTG ATGACCGCGC CCAACTTTTC
TCGATATTGT GGGGCGAATT GAATGCGCTG ACCGCTGCGT ATCGCCATTT CAGCCACACG
CTGCAACACC TGTCCGGTAC GAGTAAGCTG TTAGCACCAT TACGCACGTT GGTGGATGAT
GATTTTAACC CGGCGGACAG CTTGATCGAC GGTTCCGCGT TGGAACGGTT GCACAGCGCC
GACGATCCCG GTGTGCTGGT GCGCCCGGTC CAGAATGGTC GTGCAGGGAA AACAACGGAG
CTCTCGCTGG CTGAGTTAAC GATGCTGACG GCGGAGTTGC TGATCCCGTT GCATTTGCCT
CCTAAAGAAG CGCTGTTCGA GCAGGTCGAT GTGCTGGATT TCCCCGGCTT TGGTGAAATC
GTGCCACCAG CAAAACGCCA AAACATGCCG TATCCGCTGG CACACACGCT ATTGCGTGCA
AAACGCGCCT ATCTGCTAGA GCGCTATACC GATAATCAGG AAATGAACGT ACTGATGGTA
TGCAGCGCCG CTGGCGACCG TGGTGATGTG AAAGTGGTCG GTAAGGCGTT GGATCACTGG
GTTAAACAAA TCCAGGGTGA AAACGCACAA GTTCGCAGCC ACCGTAAACC GGGGCTGATT
TGGGCGGTTA CTCGCCACGA TCGGCGCATT ACTCACGGGC AAAACTACGA TGCAGCAGTT
CAGCGCTATG TGGGTAACCC TGGCGATGCC TGGGGAACGA TGCTGGCTAT GGATAAGCGC
GGCGTGGCGC GTATGGCAAC GTGGCTGGGC GCTGAAGTCC ACCGGGAAGT GAAACTCGGA
CGCATCGGTG AACAGCTTAA TGAACTTCAA CGTGAACTCA GCGATAACCT GTTGGGTAAC
TGGTATCTGC CCGTCGATGT TGACGATCCG GCGGAAAAGC AGCGCGTCGC AGAAACGTTG
CTGAAATCGC TCCAGACCCG AACCGGTGTA CACGGCGAAC TGCTGGAACG TCTTCTACCT
TCGCGTGATG AACTGCGCCG CCTGTATCTG CAACAACGAG GCGCAAGCTA TGGCAATTTC
CTCACCGATG CTGAAGATCC CTCTGCCCCC TTAGCCAATA GCGATCCGTT TGGTGTCGGG
ATCGAAATCG ATCTCTTTGC CGATGAACCG ATCGCTTTCG ACCAACCTGC ACCGCCCGTT
CTTGCCGTCG ATCATGGCTA TGAGGCGGAT TATGCACACG GTGTTTATCG CTACTGGATT
AACTACCTGC GCGGTCTGCC GGAAAATGCC CCGCTCCTCG ATCTGCTGAA CGTGCCGAAA
TCAACGATCG AAATGCTGGT TGAAGAATTG ATTACCGGCA GTATCCGTTT ACGAATTGAA
GAGGCATTGG TCGATATGCT GGTCGATGGT GAGTCGTTGG GCATCAACCG CGAGAATAAA
GCTGACCGTC AGGTTTCGCG CGTGCTAACT ATTCTCGGGG ATTTTGTTGC CTGGCTCGGC
TTCCAGCAGC TTGATGAATC CCTGCGCCCT GCCAGCCGCA TTAATCGCGG CCATAAAATT
TTCGCCAAGC CGGAAAAACA AGCGGTCAGC TTTGGTGCTT CGCAGCGCCT AACCAAGCTG
TCGCTAACGC CCACCAACAA TACGGCGTTT TATATTTATG ACTGGCTGGT TGGCCTGAAC
GAGATGATTA TCCAGAACGC TGGCTATTCG GCTGCACGCG AAGTCAGTGC TGAACAGCGC
GAGCAATTGG GCACGATTCT GGAATTGATT AAACCGGCTG AAAAATAA
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| Protein sequence | MKRLTPKQLS TRLHGQLQAV THGVEQAIDW VETTRQNAPR LDIEADRLIV KLRRNHNKAQ
HLSDVAQKEI AIGFFGLSQA GKSYLIASLA GGENGKLETS FEGQPLDYID HINPSDRVAA
LVTRFSRQSG VKNKSFPVQL QLLNELDIGK IMANAFLNDL NQETTFEELD ERHVAEHIKT
LLMHRQPEPV EGMDRDDVVE LWDYLARHDI KRQKQLEAHF WPVAIELAPY LAVDDRAQLF
SILWGELNAL TAAYRHFSHT LQHLSGTSKL LAPLRTLVDD DFNPADSLID GSALERLHSA
DDPGVLVRPV QNGRAGKTTE LSLAELTMLT AELLIPLHLP PKEALFEQVD VLDFPGFGEI
VPPAKRQNMP YPLAHTLLRA KRAYLLERYT DNQEMNVLMV CSAAGDRGDV KVVGKALDHW
VKQIQGENAQ VRSHRKPGLI WAVTRHDRRI THGQNYDAAV QRYVGNPGDA WGTMLAMDKR
GVARMATWLG AEVHREVKLG RIGEQLNELQ RELSDNLLGN WYLPVDVDDP AEKQRVAETL
LKSLQTRTGV HGELLERLLP SRDELRRLYL QQRGASYGNF LTDAEDPSAP LANSDPFGVG
IEIDLFADEP IAFDQPAPPV LAVDHGYEAD YAHGVYRYWI NYLRGLPENA PLLDLLNVPK
STIEMLVEEL ITGSIRLRIE EALVDMLVDG ESLGINRENK ADRQVSRVLT ILGDFVAWLG
FQQLDESLRP ASRINRGHKI FAKPEKQAVS FGASQRLTKL SLTPTNNTAF YIYDWLVGLN
EMIIQNAGYS AAREVSAEQR EQLGTILELI KPAEK
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