| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_0916 |
|---|
| Symbol | |
|---|
| ID | 8529289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 986171 |
|---|
| End bp | 988081 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | PTS modulated transcriptional regulator, MtlR family |
|---|
| Protein accession | YP_003258341 |
|---|
| Protein GI | 261820235 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.60605 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGATTCC CTAACCAACG TTTAGCGCAA CTATTTATAA TGTTGCAGAA CGAGACGCTA
CCACAGGATG AGTTGGCACA ACGGCTATCG GTGTCCACGC GTACCGTTCG CGCAGATATC
ACTGCATTAA ACGCGCTGCT GGAACAACAC GGTGCACAGT TTATTCTGAC GCGTGGTAGC
GGTTATCAGT TGAAAATCGA CGATGAAACG CGTTACCAGA CGTTACAAAC CACCCGCTCG
CGCGCACTGC GCATCCCCCG TAGCGGGCAG GAACGCGTGC AATATCTGGT GGTCAGATTT
CTGACCTCAG CGTTCTCCCT CAAACTTGAA GACCTGGCGG ACGAATGGTT TGTCAGTCGT
GCCACGTTGC AAAATGATAT GGCCGAAGTG CGAGAGAGAC TCTCCCGCTA CCAATTAATA
CTGGAGACGC GTCCGCGCCA CGGCATGAAG CTGTTTGGCA GTGAAATGTC TCTGCGCGCC
TGTCTGACCG ATCTGCTATG GGAACTGACA CAACAGAGCA CGAAAAGCCC GCTGCTCACT
GAAGAAACAC TTAATCTGGG TGTACCAGAG GCGCTTGCAG CTATCTTACA TGACTGTTTT
AGTCAGCATC ACATTCGCCT CACCGATGAG GGAGATTTGT TTATTCGCCT CTACTGTGCG
GTGGCGATAC GTCGCATCAG CGAAGGCTAC CCCTTATCGG AATTTAGCGC CGAGGATGGT
GATGACAACG TGCGTGACGC CGCGAAGGAT ATTTCGGCAG CGTTGCAACA ATTGGCGGGG
AAACCGCTGG CTGCCGCTGA AGAACACTGG CTGCGGGTAC ATATTGCCGG GCGGCGTGTA
CAGGAACTCG TACCAAGCAC CATCAGTGCC GATGACGATG AAACGCTGGT GAACTACATC
CTCGGCTATA TCAACACACA CTATAACTAC AACCTGCAAG ATGATGCGCA ACTGCACGCA
GATTTGCTGA CACATATCAA GACCATGATC ACCCGCGTGC GTTACCAGAT AATACTTCCT
AATCCACTGT TGGATAACAT CAAACAGCAC TATCCGATGG CATGGGATAT GACGCTGGCG
GCAGTCTCAA GCTGGGGAAA ATACACGCCA TATGTGATCA GCGAAAACGA GATAGGCTTC
CTGGTATTGC ATATCGGTGT TGGTCTTGAA CGGCATTACA ATATCGGCTA CCAGCGCCAG
CCACACGTGT TACTCGTGTG CGATGCCGGT AATGCAATGG TCCGGATGAT TGAAGCGGTG
CTGGTGCGTA AGTATCCGCA GATCATCGTT ACGCGTACCG TTACTCTGCG CGAATATGAA
CAGTGTGGGG GCATTGTCGA AGATTTTGTG ATTTCCACAG CACGTATTAG CGAAAAAGAT
AAACCCGTAG TTACCATCGC ACCTTTCCCT ACCGACTATC AGTTAGAACA GATCGGTAAG
CGAGTGCTGG TGGATCGCAC TCGACCGTGG ATGCTAGAGA AGTATTTCGA CGCGGCGCAT
TTTCGCATTA TTGATGGCAC GATCGATCAG CAAACGCTGT TTACTACCCT GTGCGATCAG
TTGCGTGATG AAGGTTTTGT CGATACAGCG TTCCTCGATT CAGTGGTCGA GCGTGAAGCG
ATTGTCAGCA CTTTGTTTGG CGAAGGGATT GCGCTGCCGC ATTCACTGGG CCTGCTGGCG
CAAAAAACCG TAGTCTATAC CGTATTAGCC CCGCAGGGGA TCCAATGGGG AGAAGAAACC
GCACATGTGA TCTTTTTACT GGCGATTAGC AAACGCGAGT ATGAAGAGGC AATGGCTATC
TACGATATCT TTGTCACCTT CCTGCGTGAA CGCGCCACGG CAAGATTGTG TGCCTGTACA
GATTTTGCAG CATTCAAGAC GATAGCAATG GAATGTGTCA GCCGTTTTTG A
|
|---|
| Protein sequence | MRFPNQRLAQ LFIMLQNETL PQDELAQRLS VSTRTVRADI TALNALLEQH GAQFILTRGS
GYQLKIDDET RYQTLQTTRS RALRIPRSGQ ERVQYLVVRF LTSAFSLKLE DLADEWFVSR
ATLQNDMAEV RERLSRYQLI LETRPRHGMK LFGSEMSLRA CLTDLLWELT QQSTKSPLLT
EETLNLGVPE ALAAILHDCF SQHHIRLTDE GDLFIRLYCA VAIRRISEGY PLSEFSAEDG
DDNVRDAAKD ISAALQQLAG KPLAAAEEHW LRVHIAGRRV QELVPSTISA DDDETLVNYI
LGYINTHYNY NLQDDAQLHA DLLTHIKTMI TRVRYQIILP NPLLDNIKQH YPMAWDMTLA
AVSSWGKYTP YVISENEIGF LVLHIGVGLE RHYNIGYQRQ PHVLLVCDAG NAMVRMIEAV
LVRKYPQIIV TRTVTLREYE QCGGIVEDFV ISTARISEKD KPVVTIAPFP TDYQLEQIGK
RVLVDRTRPW MLEKYFDAAH FRIIDGTIDQ QTLFTTLCDQ LRDEGFVDTA FLDSVVEREA
IVSTLFGEGI ALPHSLGLLA QKTVVYTVLA PQGIQWGEET AHVIFLLAIS KREYEEAMAI
YDIFVTFLRE RATARLCACT DFAAFKTIAM ECVSRF
|
|---|
| |