Gene Pecwa_0262 details

Gene Information

• Locus tag: Pecwa_0262
• ID: 8528624
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 292948
• End bp: 294885
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 53%
• Product: regulatory protein CsrD
• Protein accession: YP_003257723
• Protein GI: 261819617

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0339804
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGATTTA CGACCAGATT CTCTATACTC GTGATATTGC TGACGGCACT CGCCATTTTC 
CTTATGCTTT TCAGTAGTAT ATTTAGCCTC TGTTATTATA GCCAGTCGCA AACAGCGCAG 
CAGTTACGTG AGGTCACGGC CAGTATCGAT CAGGCGTTAT TAGTGCAATC GCCTGAAAAT 
ATCCGGTATT GGCTGCCGGG GATGATGAAA ACGGCGGGAA TTGTCGCGCT GGAGATCCAG 
GATAGCGATT CGATCCTCTA TGCAATACAG TTGCCCGAGG CCAGTTGGGA ACGGGCGCAT 
CTCTATCATG AAGTCGAATT CCCGCTGATG CATCATTTGA ACATGACGAT CGCCTTAAAG 
TATGTCGATC CGCTGATTGG TTTACCGCGC TTTGTGGTGT CGACGCTGTC GGTGTTACTG 
GCCGCAAGCC TGATGCTCCT GATGCTTTAC TTCTCCATTC GCTGGCTACG CCGCCAGACT 
GCCGGACAGG AAGAGTTGGA AAAGCGAGCG CAGCGTATTC TCAAAGGCGA ACGTGAATCG 
GTGATGCAGG GGGCAGTACA TGAATGGCCC GTCAATACCA GCGGGGCACT CGACCAACTG 
TTGTCTGATT TAGTGGAAGC GCGTGAGGAA CGCGGGCGGG TTGATACCTT AATTCGTGCC 
TTTGCCGCGC AGGATGCTGA AACCGGGCTA AACAATCGTC TGTTTTTTGA TAATCAACTG 
ACCACGCAGT TGGAAGATGG CGAAGAGGTG GGGACACACG GCATCGTTAT GATGATCCGC 
GTGCCTGATT TTGAAACGTT ACAGGAAACG CATGGCGATA GCGCTATCCT GCAGGAATAC 
CGTTTTACGC TCGTCAACCT GCTGTCGACG TTTGTCATGC GCTACCCCTC TGCGCTGCTG 
GCGCGCTATT TCAGCAGCGA TTTCACCGTA TTACTCCCCC ACAGTACGCT AAAGGAAGCT 
AATGCGATTG CCACGCAGTT GGTGAAAGCC ATCGATATTC TCCCTGCCTG TTCGCTTATC 
GATCGGGAGG AGGTTCTCCA CATTGGTATT TGCGCCTATC GCGGCGGGCA AAGTGCTGAG 
CAGGTTATGG AAAGCGTGGA GGATGCGACG CGTAATGCGG TATTGCAGGG GGGCAACAGT 
TGGTGCGTGT TTGACAGGCA GGTGCCGGAT AAAGGGCGCG GCAGCGTGAA ATGGCGGACC 
TTGCTGGAAC AAACGTTGGC GCGTGGCGGG CCGCGATTGT ACCAGAAGCC CGCTGTCACC 
AAAGAGGGCG TTGTGCATCA TCGTGAAATG ATGAGCCGGA TTTACGATGG GGAACAGGAA 
TTGCTCGCCG CAGAGTATAT GCCTCTGGTT CAACAGTTGG GGTTGGCGGC TAGCTATGAT 
CGCCAACTGG TCGCTCGAAT TGTTGATTTG TCAGCGAACT GGCCCGGAGA AACGCTGGCT 
CTTCCAGTAA GTGTGGACTC ACTTTTGCAA AAACCTTTCT TGCGCTGGTT GAACGAAATA 
TTGCTGCAAT GTCCGAAAAC ACAGCGGCAG TGCATTTTAT TTGAACTTGC AGAGGCTGAT 
GTTTGTCAAT ATATCGGTCG CCTGCGCCCG GTTCTTAATG TGATCCTGGA GTTAGGCTGT 
CGCTTGGCGG TAACGCAGGC GGGTTTGACA CTGGTCAGCA CGACGTATAT CAAGTCGCTT 
CCCGTGGAGG TTATCAAGCT TCATCCCGGT TTGGTGCGCA GTCTTGAACG TCGCCCGGAA 
AATCAGCTTT TTGTGCAAAG CTTGACCGAA GCCTGTAAAG GTACGCAAAC TCGGGTGTTT 
GCCGCTGGTG TGCGTACCAA AGAGGAGTGG CGGATGCTGT TGGGTAAGGG GGTTTATGGC 
GGGCAAGGCG ATTTTTTTGC CGCATCAATC CCTGTAACGG ATGAGCTGAA AAAATATTCA 
CCGCAGCATC GTGTTTAG 

 

Protein sequence

MGFTTRFSIL VILLTALAIF LMLFSSIFSL CYYSQSQTAQ QLREVTASID QALLVQSPEN 
IRYWLPGMMK TAGIVALEIQ DSDSILYAIQ LPEASWERAH LYHEVEFPLM HHLNMTIALK 
YVDPLIGLPR FVVSTLSVLL AASLMLLMLY FSIRWLRRQT AGQEELEKRA QRILKGERES 
VMQGAVHEWP VNTSGALDQL LSDLVEAREE RGRVDTLIRA FAAQDAETGL NNRLFFDNQL 
TTQLEDGEEV GTHGIVMMIR VPDFETLQET HGDSAILQEY RFTLVNLLST FVMRYPSALL 
ARYFSSDFTV LLPHSTLKEA NAIATQLVKA IDILPACSLI DREEVLHIGI CAYRGGQSAE 
QVMESVEDAT RNAVLQGGNS WCVFDRQVPD KGRGSVKWRT LLEQTLARGG PRLYQKPAVT 
KEGVVHHREM MSRIYDGEQE LLAAEYMPLV QQLGLAASYD RQLVARIVDL SANWPGETLA 
LPVSVDSLLQ KPFLRWLNEI LLQCPKTQRQ CILFELAEAD VCQYIGRLRP VLNVILELGC 
RLAVTQAGLT LVSTTYIKSL PVEVIKLHPG LVRSLERRPE NQLFVQSLTE ACKGTQTRVF 
AAGVRTKEEW RMLLGKGVYG GQGDFFAASI PVTDELKKYS PQHRV