| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4962 |
|---|
| Symbol | |
|---|
| ID | 4583523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | - |
|---|
| Start bp | 469890 |
|---|
| End bp | 470690 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639772265 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_918718 |
|---|
| Protein GI | 119387684 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0536074 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0487746 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCGGG GCTCGGGCAA CCGGGGGCCA GCCCCCTTCG GTCGAGGGAA CAAGCGCCGC
GCAAGGACGC GGGAACAACG GGGAACGCAC AGGATGCCAG CAAGACCGCT GTCGCAATTC
AAATACATGA GCTTCGATGT CGTCGGCACG CTGATCGACT TCGAATCCGG GCTGACCGGC
GCGCTGGCCG CGATCGCTGC CGAAAAGGGC GTCGATTTCG ACCCCGAGCG CGCGCTGGAC
CTGTATCGGG CCGCCCGCTA CATGCCGGGC GTCGGGCATT TCCCCGACGA TCTGGTGCGC
GTCTACAAGG TGATCGCGCC CGATCTGGGC CTGCCTGCGG ACGACGCCCA TGCCGCGCGG
CTGCGCGACG CGGTGCCGGG CTGGAAACCC TTTGCCGATT CCGTCGCCGC CATGGCGAAG
CTGAAGGGCA GATACCGGCT GATCGCCATG ACCAACGCCC AGCGTTGGGC GTTCGAGCAT
TTCAGCGCCG CGCTGGGGCA CCCCTTCCAT GCCTCCTTCA CGGTGGATGA TACCGGCGTC
GAAAAGCCCG ATCCCGCCTT CTTCCGCCAG GTCTTCGCCT TCGTCGAAAG CGAGGGGGCC
GGCAAGGACG ACATCCTGCA TGTCGCGCAA AGCCAGTATC ACGACATCGG CGTGTCGCGC
GACCTGGGCA TGACCAATTG TTGGATCCAG CGCCGGCATG CCCAGAAAGG CTATGGCGGC
ACCATCGAGC CTGCCGAATT CACCACCCCT GACCATCACT TCACCTCGAT GGCCGAACTG
GCCGAGGCCG CGACCGCGTG A
|
|---|
| Protein sequence | MGRGSGNRGP APFGRGNKRR ARTREQRGTH RMPARPLSQF KYMSFDVVGT LIDFESGLTG
ALAAIAAEKG VDFDPERALD LYRAARYMPG VGHFPDDLVR VYKVIAPDLG LPADDAHAAR
LRDAVPGWKP FADSVAAMAK LKGRYRLIAM TNAQRWAFEH FSAALGHPFH ASFTVDDTGV
EKPDPAFFRQ VFAFVESEGA GKDDILHVAQ SQYHDIGVSR DLGMTNCWIQ RRHAQKGYGG
TIEPAEFTTP DHHFTSMAEL AEAATA
|
|---|
| |