Gene Pden_4882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4882 
Symbol 
ID4583443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp386548 
End bp387327 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content64% 
IMG OID639772185 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_918638 
Protein GI119387604 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.947992 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGGA CCGTCCTTGC AACCCTGCAG GTCCTCGTGG CGGTCATTGC CGTCGCGCTG 
TGGTGGGTGA TCACCCAGAC GTCGATCCTG GGCGATCCGG CCCGGATCCA GTTCTTTTTC
TCGACGCCCG CCGACGTGTT CTGGCAGATC GTGGCCTGGT TCAGGAGCGG CGAGATCTGG
CGGCACCTGT GGATCACGCT GATCGAGGCC GCGCTCGCTT TCGTCATCGG TGCGGTGGCC
GCGATGATCG CCGGGTTCTG GCTGGCGCGC AGGCCGAAGC TGGCCGCGGT TTTCGACCCC
TATGTCAAGG CGGCCAACGC CTTGCCGCGC GTGGTGCTGG CGCCGATCTT CACGCTGTGG
TTCGGCCTGG GCATCTGGTC CAAGGTGGCG CTGGGGTTCA CGCTGGTCTT CTTCATCGTG
TTCTTCAACG TCTATCAGGG CGTGAAGGAG GTGAACCGGA CCGTCCTGCA GAACGCCCGG
ATGCTGGGCA TGTCCGAGCG TCAGTTGCTG CGCCACGTCT ATCTGCCCTC GGCGCTGAGC
TGGGTGTTCT CCTCGCTGCA TGTCTCGATC GGGTTCGCCG TGGTCGGCGC GGTCGTGGGC
GAATATCTGG GGTCTTCCGC CGGGCTTGGC TACCTGATCG CGCAGGCCGA AGGCATGTTC
GACATCGCCG GCGTGTTCGC GGGAATGTTC GTCCTTTCGG CCTTCGTCCT TCTGATCGAC
TGGGGGGTGA CGATGGTGGA AAGGAAGCTG CTGGTCTGGC AGCCCGACAA CAATCACTGA
 
Protein sequence
MSRTVLATLQ VLVAVIAVAL WWVITQTSIL GDPARIQFFF STPADVFWQI VAWFRSGEIW 
RHLWITLIEA ALAFVIGAVA AMIAGFWLAR RPKLAAVFDP YVKAANALPR VVLAPIFTLW
FGLGIWSKVA LGFTLVFFIV FFNVYQGVKE VNRTVLQNAR MLGMSERQLL RHVYLPSALS
WVFSSLHVSI GFAVVGAVVG EYLGSSAGLG YLIAQAEGMF DIAGVFAGMF VLSAFVLLID
WGVTMVERKL LVWQPDNNH