| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4425 |
|---|
| Symbol | |
|---|
| ID | 4582975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1628108 |
|---|
| End bp | 1630201 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639771732 |
|---|
| Product | glycogen debranching enzyme GlgX |
|---|
| Protein accession | YP_918185 |
|---|
| Protein GI | 119387130 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGGC TGCGTATCTT CGAGGGCCGG GCGGAACCGC TGGGCGCCAC TTTCGATGGC
GATGGCGTGA ACTTCGCCGT GTTTTCCGAA CATGCGCGGC GGGTGACGCT GTGCCTGTTC
TCGCCCGACG GCCGGACCGA GACGCACCGG CTGGACCTGC CGGAACGCGA CGGCGATGTC
TGGCACGGCT ATGTCCCCGG CCTGCGCCCC GGCCAGCTTT ACGGGCTGCG CGCCGATGGT
CCCTATGCGC CGGCCGAGGG GCACCGCTTC AATTATCACA AGCTGCTCAT CGATCCCTAT
GCCAAGCGGC TGACCCGGCA TCCGGTCTGG CACGACGCGC TGATGGGCTA TGCCGTCGGC
TCGCCCGACG CCGATCTCAG CTTCGACCGC CGCGACAGCG CGCGCTTCAT GCCGCGCTCT
GTGGTCGAGG ATCCGTCCTT CGCCTGGGGC GCCGACCAGC CGCCGCGCCG CGACATCGCC
GAGACGGTGA TCTACGAGGC CCATGTCAAG GGCCTGACCC AGCTGCATCC CGACGTGCCC
CATCGCGGCA GCTTTCTGGG CCTCGCCTCG GACCCGGTCC TGGAACACCT GCAATCCCTG
GGCGTCACCG CGCTGGAGCT GCTGCCGGCG CAGGCCTTCC TGAACGACCG TTTCCTGCTG
GAAAAGGGGT TGGTGAACTA TTGGGGCTAC CAGACGCTGG GCTTTTTCGC CCCGGACCCG
CGCTATCTGG CCAAGGATCA GATCGCCGAG TTCCAGCACA TGGTCGCCCG CATGCACGCT
GCCGGGATCG AGGTCATCAT GGACGTGGTC TACAACCACA CCGGCGAGGG CAACGAGCTT
GGCCCGACGC TGTCCTTTCG CGGCCTCGAC AACCGCAGCT ACTACCGCCT GCAGGAAAAT
CCCCGCCATT ACGTCGATGA CACCGGCACC GGCAACACGC TGAACGTCAA TCACCCCATG
GTGCTGCGCA TGGTCATGGA CAGCCTGCGC TATTGGGTCG AGGTGATGCA TGTGGACGGT
TTCCGCTTCG ATCTTTGCAC GGCGCTGGGG CGGCGGGTGC GCGGCGGTTT CGACCGCAGC
GCCTCGTTCT TCGATGCGAT CCGGCAGGAC CCGGTGCTGA CGCGGGTCAA GCTGATCGCC
GAGCCCTGGG ACATCGGACC CGGCGGCTAT CAGGTCGGGG GCTTCCCGCC GCCCTTCCTG
GAGTGGAACG ACAAGTATCG CGACGGCATC CGCCGCTTCT GGCGCGGCGA TGCGCGGCAG
GTGCCCGAGC TTGCCGACCG CATGGCCGGC TCGGCCCGGC AGTTCGACCA TTCCGGCCGG
CCCGCCACCT CGTCGGTGAA CTTCCTGACC GCGCATGACG GCTTTACGCT GATGGATGTG
GTCAGCTACG GCGAAAAGCA CAACGCCGCC AATGGGGAAC AGAATCGCGA CGGCCATTCC
GAGAATTTCT CGGACAACAT GGGTGTCGAG GGGCCCAGCG ACGATCCCGC CATCCTCGAC
GCCCGCGCGC GCCGGCGCCG CAACCTGCTG GCGACGCTGC TTTTGTCGCA GGGCACGCCG
ATGCTGCTGG CCGGGGACGA GCTGGGCAAT TCGCAGGCCG GCAACAACAA CGCCTATTGC
CAGGACAACC AGATCGGCTG GGTGCAGTGG GACGGCGCCG ATCCTGCGTT TCTGGACTTT
ACCCGCAGGC TCATCGCCTT TCGCCGCGCC CATCCGATCC TGCGGCAGAA ACGCTTTCTG
CATTCGCGCC CGCGCCTGAC CGACGGGCTG CCCGACCTGT TCTGGCTGCG CCCGGACGGA
GAGGAGATGA CCCCGGCCGA CTGGGGCAAT CCCGAGCTGC GCGTGCTTTG CGCCGAGCTG
CGCATGGCCG CCGGCACCCC CGATTATGCG CAGCGCGAGG AGGCGCTGTT CCTGGTCTTC
AACAACGGCG ACCCGCTGGA GGTGGTGCTG CCCGAACGCC CCGAGGGCTG GCGCTGGCGG
CTGCACCTGG ACACCAGCCG TCCCGATCTG GCCCCGCATG TGGTCGAGGG CGACCGGCTG
GCGGTGGACG GCCAGTCCGT CCTCGCCTTC GATCTGGAGC GCGACCGTGA CTGA
|
|---|
| Protein sequence | MTGLRIFEGR AEPLGATFDG DGVNFAVFSE HARRVTLCLF SPDGRTETHR LDLPERDGDV
WHGYVPGLRP GQLYGLRADG PYAPAEGHRF NYHKLLIDPY AKRLTRHPVW HDALMGYAVG
SPDADLSFDR RDSARFMPRS VVEDPSFAWG ADQPPRRDIA ETVIYEAHVK GLTQLHPDVP
HRGSFLGLAS DPVLEHLQSL GVTALELLPA QAFLNDRFLL EKGLVNYWGY QTLGFFAPDP
RYLAKDQIAE FQHMVARMHA AGIEVIMDVV YNHTGEGNEL GPTLSFRGLD NRSYYRLQEN
PRHYVDDTGT GNTLNVNHPM VLRMVMDSLR YWVEVMHVDG FRFDLCTALG RRVRGGFDRS
ASFFDAIRQD PVLTRVKLIA EPWDIGPGGY QVGGFPPPFL EWNDKYRDGI RRFWRGDARQ
VPELADRMAG SARQFDHSGR PATSSVNFLT AHDGFTLMDV VSYGEKHNAA NGEQNRDGHS
ENFSDNMGVE GPSDDPAILD ARARRRRNLL ATLLLSQGTP MLLAGDELGN SQAGNNNAYC
QDNQIGWVQW DGADPAFLDF TRRLIAFRRA HPILRQKRFL HSRPRLTDGL PDLFWLRPDG
EEMTPADWGN PELRVLCAEL RMAAGTPDYA QREEALFLVF NNGDPLEVVL PERPEGWRWR
LHLDTSRPDL APHVVEGDRL AVDGQSVLAF DLERDRD
|
|---|
| |