| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4018 |
|---|
| Symbol | |
|---|
| ID | 4582569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 1165346 |
|---|
| End bp | 1167265 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639771327 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_917780 |
|---|
| Protein GI | 119386725 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.730254 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATGA CCTGCCGCCT GATCGCCTTG CTGCTGAACC TGTTCCTGGC CTTGCCCGCC
GCCGCCAATC CGGCGCTGGA AGCGGTCATC GCCGACAACC TGGACCAGAT CGAGCGCCCC
TCGCGCCGCA CGGTCGAGCC GGTGGTGGCC CGGATCGCCG CCACCGGACC CGAGGGGATG
GCGCTGCTGT CGGCATGGGC GGGCCGCTCG CTTGGCCTGG CCGACGGGCG GCTGGTGATC
GTCACGGGCG ACGGCGCCAC GGACGCGGTG ACCGGGCAGG CCGTCACGGG CGCGGACCCG
AAGATGCTGC GCCCCAATGC CGGGGTGCGC GGCGTGATCG AATCGGCGCT GGTCGCGGGC
GAGATTGCCA GCCCCGACCG GGCGCGCCGC GCCGCCGCGC TGGCCAGCAT CGCCCGCGAC
GGCACCGCCG AGCATCTGGC CGCCCTGCGC GCCGCCGCGC CCGAGCCGGA CCCCGCTCTG
GCCGCCCGCC GCGCCCGGAT CGAAAAGCTG CTGACCATCC GCTTCGACGC CGACCCCGCC
GCGCGGGTGA CCGCCATTCA GGACATGGCG GGCGATGTCG GCCTTGATTT CCGCGCCGCG
CTGAACCCTT TGCTCGCGAC CCGGCGCGTG GCCTCGGCCG ATGAGCCGCA GGGCGCCAAC
ATCGCCCGTG AGTTGCGCGT GGGGTCGGAC GATTTCCCGC GCGAGGCCGC CATCGCCCTG
CTGACGGCGC AGGGGCTGGT CCAGCCGCGC CTGACTGCTG CCGACCAGCG CAATGCACTG
GCCGCGCATA TCGTCGATGG CAGGGTAGGC GGCGTTTCCG TCGCCGAACT GTCCGACCCG
CAAGCCCGCG ACCGCGCCTA TGAGGCGCTG GAGGGGGCGG GAACCGTCCC GCCCGCCGCC
ACCGAGGCCG AGACCGAGGC GGCGCTGGCA GGCATCCGCT TCTTCGATGT CTATGCAGAG
CCTGAGGCGG CCGTGACCGA CGCCGCCCGC GCCGCGCAAA GGGGTGCGGA ATGGCGGCTG
GGGGCGATGA AGGGGATCGA CCTTGGGCTG GACGCGCTGT CTCTTGCCTC GATCTACTTC
CTGGCCGCAA TCGGGCTGGC GATCACCTTC GGGGTGATGC GCGTCATCAA CATGGCGCAT
GGCGAATTCA TCATGATGGG CGCCTATACC GGCTATGTCG CGCAGACCTT GATCGCGGAT
CGCACCCTGT CGCTGGTGGC GGCGCTGCCG CTGGCCTTCG CGGTGACCTT TGCCGCAGGC
GTGGTGCTTT ACCGGCTGGT GATCCGGCAC CTGGCGCATC GGCCGCTGGA GACGCTGCTT
GCGACCTTCG GCGTCTCGAT CGCGCTGCAG CAGCTTGCCA AGAACATCTT CGGCACGCAG
GCCCGGCCGC TGACCGCACC CGCATGGCTG GAAGGCGCGA TCACGGTGAA CGACGTGGTC
TCGATCTCGA CCATCCGGGT GGCGATCTTC GTGCTGGCGC TGCTGTTCCT GGGCCTGTTC
CTGTTCATCA TGAAGCGCAC GAGGCTGGGA CTGGAGGTCC GCGCGGTGAC GCAGAACCCC
GGCATGGCCG CCAGCATGGG GATCAACCCG GACCGCATCG CCATGATGAC CTTTGGCCTC
GGCTCGGGCA TCGCGGGGAT CGCGGGCGTC GCCATCGGCC TTTTCGCCCA GGTCACCTCG
GAACTGGGCC AGCAATACAT CGTGCAAAGC TTCATGACGG TTGTGGTCGG CGGCGTCGGC
AACATCTGGG GCACGCTGGC GGGCGCCGGG CTGATCGGGG TGCTGTCCAA GGTGATCGAA
TCCTTCAATC CCTCGAACAC GCTGGCGGCG CAGACCTTCA TGATCCTGTT CATCGTGATC
TTCATCCAAT TCCGGCCGCG CGGCATCATC CCGCAGCGCG GCCGTGCGGC GGAGGCGTGA
|
|---|
| Protein sequence | MPMTCRLIAL LLNLFLALPA AANPALEAVI ADNLDQIERP SRRTVEPVVA RIAATGPEGM
ALLSAWAGRS LGLADGRLVI VTGDGATDAV TGQAVTGADP KMLRPNAGVR GVIESALVAG
EIASPDRARR AAALASIARD GTAEHLAALR AAAPEPDPAL AARRARIEKL LTIRFDADPA
ARVTAIQDMA GDVGLDFRAA LNPLLATRRV ASADEPQGAN IARELRVGSD DFPREAAIAL
LTAQGLVQPR LTAADQRNAL AAHIVDGRVG GVSVAELSDP QARDRAYEAL EGAGTVPPAA
TEAETEAALA GIRFFDVYAE PEAAVTDAAR AAQRGAEWRL GAMKGIDLGL DALSLASIYF
LAAIGLAITF GVMRVINMAH GEFIMMGAYT GYVAQTLIAD RTLSLVAALP LAFAVTFAAG
VVLYRLVIRH LAHRPLETLL ATFGVSIALQ QLAKNIFGTQ ARPLTAPAWL EGAITVNDVV
SISTIRVAIF VLALLFLGLF LFIMKRTRLG LEVRAVTQNP GMAASMGINP DRIAMMTFGL
GSGIAGIAGV AIGLFAQVTS ELGQQYIVQS FMTVVVGGVG NIWGTLAGAG LIGVLSKVIE
SFNPSNTLAA QTFMILFIVI FIQFRPRGII PQRGRAAEA
|
|---|
| |