Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_3862 |
Symbol | |
ID | 4582413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | + |
Start bp | 994597 |
End bp | 997089 |
Gene Length | 2493 bp |
Protein Length | 830 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639771171 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_917624 |
Protein GI | 119386569 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.725538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.276406 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCGCC TCGCCGCGCT GTCCCGGCTC GCATCGCTGA TCCTGGTGCT GTTTCTGGCG CTGAACCTGC CTGCCCTTGC CCAGCAAGAG CAGGAGGCGC CGGATCTTGC CGCCTGGGAC AAGCTGGCCG AGCAGGCCGA GCAGATCGTG GCATCGGGCT CGGCCAACGA TGTCCGCTTG CAGGCCATCC GCGAAGAGGT GGTGAAATGG CGCGAGCGGC TGAAGGCGGG GCAGGGTATC AACGCCACCC GCATCGCCAC GCTCAAGGAC CAGATCGCCG CGCTGGGGAC ACCCCCTGCC GAGGGCCAGA CCGAGCCCGA GGAGATCGCC GCCCGCCGCA AGGAACTGAA CGAGCAGCTT GCCACGTTGC AGGCACCGGG CTTGCAGGCG GTCGAAGCCT ATGGCCGCGC CGACGGCATC GTCGCCCAGA TCGACCAGAC CCTGCGCGCC CGCCAGACCT TTGCGCTGAT CCGCAAGACG CCCACGCCGC TGAACCCGGC GAACTGGGGA CCGGCCATGG CCGAAGCGGG CCATGTCGCC GGACAGATCT ATGCCGAGGC GCGGGCGCGC TGGGACGGCA CCGGCGGCAT GTCCGGCTTT ACCCAGCGCC TGCCGCTGAT CGGGGGTTTC CTGCTGGTGG CGCTGATCCT GCTGTCGCGG GGCCGGCACT GGATCGATTC GCTGCCCTCT CGGCTGTCGG CGCGGGCCAG CGAGCGGTCG CGCGCGGCGC TGATCTTCGG CGTCTCGCTG GGCCAGATCG CCATCCCGCT GATCGGCGTG ATCCTGTTCG CGGCGGCGCT GGCCTCGACC GACCTGCTCG ACGACTGGGG CCTGCCGCTT CTGCGCTCGG TGCCGGCGGC GGGGCTGTCC TTCTTTGGCG GCATCTGGCT TGGGCGGCAG CTGTTCCCGG CCGCCGATAC CGCCGTCCAG CCGCCCCTGC CGATGGACGA GGAGCGCCGT GCCAAGGCAC GTTTCCGCGT CACGCTGCTG GCTTCGGCGT TGGCGCTGCA CCAGCTTTTC GCCCGCTCGA TCCTGCCGCT TTCCGGCTTC AACAGCCAGA ACGACAGCGG CACCGTGCCC CAGCGCCTCA GCGAGGCTTC GGCCGGGGTC TGGCACTTCC TGCTGATCCT GTTCGGGGCC TTCTGCCTGT TCAGGCTGTG CAACCTGCTG CGCGGGCTGC GCCCCGCCGA AGCGGCCGAT ACGCCCGATT ACCGCGTCCG CGTGGTAAGC TTTCTGGCCA TGACGGGGCG GCTGGCGGCG CTTGTCGCGC CGGTGCTGGT GGCGGTGGGC TATGTCACGG CGGGCAATGC GCTGCTCTGG GCGCTGGTGC TGACGCTGGC GCTGGTCGGG CTGCTGGTCA TCCTGCAGGA TTTCATCGCC GATCTTTATG CCCTGGCCAA GGGCGGCGAC CAGTCGGCGC GGGATGCGCT GATGCCGGTG CTGATCGGAT TCGCGCTGAT CCTGCTGTCG CTGCCGCTTT TCGCGCTGAT CTGGGGCGCG CGCGCCAGCG ACCTGGCCGA GGCCTGGACC AAGGCGCAGC AGGGCTTTTC CTTCGGCGGC GTGCGGCTGT CGCCCATGGC GATGCTGACT TTCCTGATCG TCTTTGCCGC CGGCTATTTC CTGACCAATT TCGTGCAGGG GGCATTCCGC AGCTCGATCC TGCCCAAGAC GAAACTGGAC TCGGGCGGGC AGAACGCGGT CGCCTCGATG ATCGGTTATG TCGGGCTGGC GCTGGCGGCG GTCTTTGCCG TCACCTCGGC CGGGATCGAC CTGACCTCGC TGGCCTTCGT CGCCGGTGCG CTTTCCGTCG GCATCGGTTT CGGCATGCAG CAGGTGGTGT CGAACTTCGT CTCGGGCATC ATCCTGCTGG TCGAGCGTCC CATCGCCGTC GGCGATTGGA TCGAGGTCGG CGGCCAGCAG GGCGTCGTCA AGAAGATGGC GGTGCGCGCC ACGCAGATCC AGACCTTCGA CCGCACCCAG GTGATCGTGC CGAACTCGAA CCTGATCACC CAGCCGGTCA CGAACTGGAC GCGCGGCAGC CTGTCGGGCC GGATCATCGT GCCGGTCACC GTCTCGCATG GTTCGGACAG CCGCAAGGTC GCCGAGCTGC TGCGCGAGAT CGCCGAGGAT CAGCCCACGG TGCTGATCAA CCCGGCGCCC GCCGTGCTGT TGCGCAGCAT CACCGCCGAC GGGCTGAACT TCGAACTGCG CGCCGTGCTG TCGGACATCA ACGGCGGGTC CGGGGTTTCG TCCGAGATCA ACCACCAGAT CCTCGAACGC TTTGCGGCGG CCGGCATCGT CCTGCCGGGC AGCACCCGCC CCTCGCGCGA CATCTACCTG CATGGCGAGG CCGACATGCC CGCGCCGGCG CCGAAACCCG TGCCCGCCGC GGCAGCTGAT CCGCGCAAGA CCACGCCGCA GGAGGCCGAG ACGCATGACA GTGGCGAATT CGGTCCCGCC GGCATGCAGG ACGACGATGG AGGCCGCGCA TGA
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Protein sequence | MPRLAALSRL ASLILVLFLA LNLPALAQQE QEAPDLAAWD KLAEQAEQIV ASGSANDVRL QAIREEVVKW RERLKAGQGI NATRIATLKD QIAALGTPPA EGQTEPEEIA ARRKELNEQL ATLQAPGLQA VEAYGRADGI VAQIDQTLRA RQTFALIRKT PTPLNPANWG PAMAEAGHVA GQIYAEARAR WDGTGGMSGF TQRLPLIGGF LLVALILLSR GRHWIDSLPS RLSARASERS RAALIFGVSL GQIAIPLIGV ILFAAALAST DLLDDWGLPL LRSVPAAGLS FFGGIWLGRQ LFPAADTAVQ PPLPMDEERR AKARFRVTLL ASALALHQLF ARSILPLSGF NSQNDSGTVP QRLSEASAGV WHFLLILFGA FCLFRLCNLL RGLRPAEAAD TPDYRVRVVS FLAMTGRLAA LVAPVLVAVG YVTAGNALLW ALVLTLALVG LLVILQDFIA DLYALAKGGD QSARDALMPV LIGFALILLS LPLFALIWGA RASDLAEAWT KAQQGFSFGG VRLSPMAMLT FLIVFAAGYF LTNFVQGAFR SSILPKTKLD SGGQNAVASM IGYVGLALAA VFAVTSAGID LTSLAFVAGA LSVGIGFGMQ QVVSNFVSGI ILLVERPIAV GDWIEVGGQQ GVVKKMAVRA TQIQTFDRTQ VIVPNSNLIT QPVTNWTRGS LSGRIIVPVT VSHGSDSRKV AELLREIAED QPTVLINPAP AVLLRSITAD GLNFELRAVL SDINGGSGVS SEINHQILER FAAAGIVLPG STRPSRDIYL HGEADMPAPA PKPVPAAAAD PRKTTPQEAE THDSGEFGPA GMQDDDGGRA
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