| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3811 |
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| Symbol | |
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| ID | 4582362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 946626 |
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| End bp | 950090 |
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| Gene Length | 3465 bp |
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| Protein Length | 1154 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639771120 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_917573 |
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| Protein GI | 119386518 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACCGC TTCCCGAACA CCTGACCCTG TCCGGCGCGC CCGAGGGCAT GGACGCCGCG
CTGATCGCGC GCGAACTGTC CCGCGGCAAT CCCGTCACCC ATATCGCCCG CGACGACCGG
CGCATGGCCG CGATGCGGGC CGCGTTGGGG TTCTTCGCGC CCTCGGCCGC GGTGCTGGAG
TTTCCGGCCT GGGACACGAC GCCCTATGAC CGCGTCTCGC CCGCCCCCGG CGTGATGGCG
GCGCGCATGG CGGTGCTGAC GGCGCTGGCG CATGGCGCGC TGAAGGGGCC GTTCGTGCTG
CTGACCACGC TGTCGGCCGC CATGCAGCGC GTGCCTGCGC GCGAGGCGCT GCGCGATGCC
GGCTTCTCGG CCGCCGTGGG CGATCGCATG GACGAGGGGG CCTTGCGCGC CTTTCTTGCC
CGCATGGGCT TCGTGCAGGC GCCGACCGTG ACCGAGCCTG GCGATTTTGC CGTCCGGGGC
GGCATCATCG ACATCTTTCC TCCCGGCGAC ACCGGCCCGA TCCGGCTGGA CATGTTCGGC
GACGTCCTGG ATGGCGCGCG CAGATTCGAT GCAGAAACAC AGCGTTCCAT CGAAAAGCTC
GACCGGATCG AGCTTGCGCC CATGTCCGAG GTGATCCTGG ACGAAGCCGC CATCACCCGT
TTTCGCCAGA ACTACCGTGC CGAATACGGC GGCGGCGCCA ACGATCCGCT TTACGAAGGC
ATCAGCGCCG GCCGCAAGAT GGCCGGCATG GAACATTGGC TGCCCTGGTT CCACGTGCGG
CTGGAAAGCC TGTTCGACTA TCTGCCCGGC GCCTCGGTGG TCGCGGACGA CCATCTGGAC
CAGGTTCGCG GTGCGCGCTG GCACACGATC ACCGAACAGT TCGAGGCCCG GCGCGAGGCG
CTGGCCCGCA AGAGCAGCGC CGACGCTGTC TATCGCCCGG TCCTGCCCGT CCAGATGTTC
CCCGACGAGG CCGAATGGAT GCGCTGGCTG GCCGCGCATC GCATGCTGCG GCTTTCGGTT
CTGCCCCAGC CGCCGGGACC GGGGATTCTG GATGCCGGAG GCCGCGTCGG TCGCAACTTC
GCACCCGAAC GGCAAGCCGA GAAGGGAAAT CTTTTCAAGG CGCTTGCCGA TCATATTCGA
AACATTCAAG CCTCGCGCCG CGTGGTGATC GCCAGCTTCT CGGAAGGCGC GCGCGAGCGG
CTTGCCGGGC TGATTGCCGA TGAGGGGATC AAGGGCGCCA AGCCCATCGC CGACCTGCGC
GACCTGCCGG ACCAGCCCGG TGCGTTGGGT CTGGCGGTCT GGCCGCTGGA AGAGGGCTTT
ACCTCGGACG GCTCGGCTAC CGGCGCGCTG GCGGTAATCT CGGAACAGGA CGTGCTGGGC
GACCGGCTGA TCCGGGGCGC GAAACGGCGC CGCAAGGCCG AGAATTTCCT GCGCGACACC
ACCACGCTGA CCCCCGGCGA CCTGGTCGTG CATGTCGAGC ACGGCATCGG CCGCTATACC
GGGCTGGAAA CCGTCAAGGC GCTTGGCGTG CCGCATGATT GCGTGGCGCT GGAATATGCC
GGCGGCGACC GGCTTTACCT GCCGGTCGAG AATATCGAGT TGCTCAGCCG CTATGGGCAC
GAGGAGGGCT TGCTCGACAA GCTGGGCGGC GGCGCCTGGC AGGCGCGCAA GGCCCGGCTG
AAGGAACGCA TCAAGCTGAT CGCCGACAAG CTGATGCGCG TCGCGGCCGA GCGCATGCTG
CGCCCCGCCC CGGTGCTGGA GCCCGAGCAT CACGAGATCG AAAGCTTTGC CGCCCGCTTT
CCCTATGCCG AGACCGAGGA CCAGGCCAGC GCCATCGCCG ACGTGGCCGA GGATCTGGCC
GCCGGCCGGC CCATGGACCG GCTGGTCGTG GGCGACGTCG GCTTCGGCAA GACCGAGGTC
GCCATGCGCG CCGCCTTCAT CGCCGCCTCG CAGGGGCGGC AGGTGGCGGT GGTGGCGCCG
ACGACGCTGC TGGCGCGGCA GCATTTCCGC ACCTTCGCCG AACGCTTCCG CGGCACGGCC
ATCAATGTCC GGCCGTTGTC GCGCTTCGTT TCGGCCAAGG ATGCCACCGA GACCCGCAAG
GGCCTTGCCG AGGGCACGGT CGATATCGTC GTCGGCACCC ATGCCGTGCT GTCGAAGCAG
GTGCGCTTCA AGAACCTGGG CCTCTTGATC GTGGACGAGG AACAGCATTT CGGCGTCGCC
CACAAGGAGC GGCTGAAGGA GTTGCGCAGC GACATTCACG TCCTGACCCT GACCGCGACG
CCGATCCCGC GCACCTTGCA ACTGTCGCTG ACGGGCGTGC GCGACCTGTC GATCATCGGC
ACGCCGCCGG TGGATCGGCT GTCGATCCGC ACCTATGTCA GCGAATTCGA TGGCGTGACC
ATCCGCGAGG CGCTCTTGCG CGAGAAATAT CGCGGCGGGC AGAGCTTTTT CGTCGTCCCG
CGCCTGGCCG ACCTGCCGGA GGTCGAGGAA TGGCTGCGCG AGCATGTGCC TGAGGTCAGC
ACCATCGTTG CCCATGGCCA GTTGGCGGCG GGCGACCTGG ACCGCCGCAT GAACGCCTTT
TACGACCGCG GGGCGGATGT GCTGCTGGCG ACGACCATCG TCGAATCGGG GCTGGACATA
CCGACCGCGA ATACCATGGT GGTCTGGCGC GCCGACATGT TCGGCCTGGC GCAGCTATAC
CAGATCCGCG GCCGGGTCGG GCGTTCGAAG ACCCGAGCCT ATTGCTACCT GACCACCAAG
CCGCGGGTGC CCTTGACGCC GCAGGCGATG CGGCGGCTGA AGTTCCTGGG CGCCATCGAC
AGCCTGGGGG CAGGGTTCAA CCTGGCCTCG CAGGATCTGG ACCTGCGCGG TGCGGGAAAC
CTTCTGGGCG AAGAGCAGTC GGGCCATATC AAGGAAGTCG GCTTCGAGCT TTACCAGCAG
ATGCTGGAGG AGACCATCGC CAAGCTGAAA TCCGGCGAGA TCGAGGGCAC GCCCGAGGAC
GAATGGGCGC CGCAGCTGAA CCTGGGCGTG CCGGTGACGA TTCCGGAAGG CTATGTGCCG
GATCTGGACG TGCGGCTGGG CCTTTACCGC CGGTTGGCCG AGTTGACGAC CAAGGTCGAG
CTGGAGGGTT TTGCCGCCGA ACTGATCGAC CGCTTCGGTC CCTTGCCGCG CGAGGTGAAC
ACGCTCTTGC TGGTCATCCG CATCAAGGCC ATGGCCAAGC GGGCGAATAT CGCCAAGCTG
GATGCGGGTC CGAAGGGCGC AACCATCCAG TTCCACGGCG ACAAGTTCCC GAACCCGGCA
GGGCTGGTCG AGTTCATCCA CGAGCAGCGC GGCCAGGCCA AGGTCACCGA CAACCGGATC
GTCATCCTGC GCGACTGGCC GACCGATGCC GACCGCATCA AGGGCAGCTT CGCCATCGCC
AAGGAACTGG CAGCGAAGAT CAGGGAAGGC AAGGCCAAGG GTTGA
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| Protein sequence | MAPLPEHLTL SGAPEGMDAA LIARELSRGN PVTHIARDDR RMAAMRAALG FFAPSAAVLE
FPAWDTTPYD RVSPAPGVMA ARMAVLTALA HGALKGPFVL LTTLSAAMQR VPAREALRDA
GFSAAVGDRM DEGALRAFLA RMGFVQAPTV TEPGDFAVRG GIIDIFPPGD TGPIRLDMFG
DVLDGARRFD AETQRSIEKL DRIELAPMSE VILDEAAITR FRQNYRAEYG GGANDPLYEG
ISAGRKMAGM EHWLPWFHVR LESLFDYLPG ASVVADDHLD QVRGARWHTI TEQFEARREA
LARKSSADAV YRPVLPVQMF PDEAEWMRWL AAHRMLRLSV LPQPPGPGIL DAGGRVGRNF
APERQAEKGN LFKALADHIR NIQASRRVVI ASFSEGARER LAGLIADEGI KGAKPIADLR
DLPDQPGALG LAVWPLEEGF TSDGSATGAL AVISEQDVLG DRLIRGAKRR RKAENFLRDT
TTLTPGDLVV HVEHGIGRYT GLETVKALGV PHDCVALEYA GGDRLYLPVE NIELLSRYGH
EEGLLDKLGG GAWQARKARL KERIKLIADK LMRVAAERML RPAPVLEPEH HEIESFAARF
PYAETEDQAS AIADVAEDLA AGRPMDRLVV GDVGFGKTEV AMRAAFIAAS QGRQVAVVAP
TTLLARQHFR TFAERFRGTA INVRPLSRFV SAKDATETRK GLAEGTVDIV VGTHAVLSKQ
VRFKNLGLLI VDEEQHFGVA HKERLKELRS DIHVLTLTAT PIPRTLQLSL TGVRDLSIIG
TPPVDRLSIR TYVSEFDGVT IREALLREKY RGGQSFFVVP RLADLPEVEE WLREHVPEVS
TIVAHGQLAA GDLDRRMNAF YDRGADVLLA TTIVESGLDI PTANTMVVWR ADMFGLAQLY
QIRGRVGRSK TRAYCYLTTK PRVPLTPQAM RRLKFLGAID SLGAGFNLAS QDLDLRGAGN
LLGEEQSGHI KEVGFELYQQ MLEETIAKLK SGEIEGTPED EWAPQLNLGV PVTIPEGYVP
DLDVRLGLYR RLAELTTKVE LEGFAAELID RFGPLPREVN TLLLVIRIKA MAKRANIAKL
DAGPKGATIQ FHGDKFPNPA GLVEFIHEQR GQAKVTDNRI VILRDWPTDA DRIKGSFAIA
KELAAKIREG KAKG
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