| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3460 |
|---|
| Symbol | |
|---|
| ID | 4582016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 603742 |
|---|
| End bp | 604812 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639770774 |
|---|
| Product | ABC polyamine/opine transporter, periplasmic substrate-binding protein |
|---|
| Protein accession | YP_917227 |
|---|
| Protein GI | 119386172 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.771594 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC TGCTGATCAT GACCACCGCG CTTGCCGCGA CCGCAGGCGC CGCGCAGGCG
GACATCACCG TCATGAGCTG GGGCGGCGCC TACGAGAAAT CGCAGGTCGA GGCCTATAAC
CGGCCCTTTG CGGCCAAGAC CGGCATCGCC GTCCAGATGC TGGCCGCCGA CAACCCGGCC
GCCCCGATAA AGTCGATGGT GGAATCGGGC AACGTCACGC TGGACGTGGC CGATGTCGAG
GCGACCGATG CGGCCCGTCT TTGCGACGAG GGCCTGCTGG AAGAGATCGA TCCCGCGGCG
TTTCCGCCGG CGCCCGACGG CACCCCCGCC GTCGACGACT TCCTGCCGGG CGCCCTTACG
GAATGCGCCG TGGCCTCGAT GGTGTTCTCG ACCGTCTACG GCTACGACAC GAACCGGTTC
CCGGACGAGA AGCCCGCCAC CATCGCCGAT TTCTTCGATG TCGAGAAGTT TCCCGGCAAG
CGCGGGATGC GCAAGAGCCC GAAGCCCAAT CTCGAATTGG CGCTGATGGC CGACGGGGTG
CCCGCCGCCG AGGTATACGA GGTGCTGGAG ACGCCCGAGG GCCTCGACCG CGCCTTCGCC
AAGCTCGACA GCATCAAGTC CCACATCGTC TGGTGGGAGG CCGGCGCGCA GCCGCCGCAG
CTTCTGGCCG ATGGCGAGGT GGCGATGACG ACCGCCTATA ACGGCCGCCT GTTCTCGGCC
ATGGTCGCCG AGAACAAGCC CTTCGCCATG GTCTGGGACG GGCAGGTCTA CGAATACGAG
CTTTTCGTGA TCCCCAAGGG CGCGCCGAAT CTGGACGAGG CGATGGAATA CATCAGGTTC
GCCACCGACA CGCAGCGGCT GGCCGACCAG ACCAGGTGGA TCAGCTACGG CCCGGCCCGC
AAGTCCTCGA TCCCTCTGGT GGGGCTTTTC GAGGACGGCA AGACCGAGAT GGGGCCGCAT
ATGCCGACCG CCGAGCCCAA TCTCGCGAAT GCGCTGCATT CCTCGTTCGA GTTCTGGGTC
GATCGCGACA TGGAGATCAG CGAGCGCTTC AATACCTGGC TGGTCAGGTG A
|
|---|
| Protein sequence | MKKLLIMTTA LAATAGAAQA DITVMSWGGA YEKSQVEAYN RPFAAKTGIA VQMLAADNPA
APIKSMVESG NVTLDVADVE ATDAARLCDE GLLEEIDPAA FPPAPDGTPA VDDFLPGALT
ECAVASMVFS TVYGYDTNRF PDEKPATIAD FFDVEKFPGK RGMRKSPKPN LELALMADGV
PAAEVYEVLE TPEGLDRAFA KLDSIKSHIV WWEAGAQPPQ LLADGEVAMT TAYNGRLFSA
MVAENKPFAM VWDGQVYEYE LFVIPKGAPN LDEAMEYIRF ATDTQRLADQ TRWISYGPAR
KSSIPLVGLF EDGKTEMGPH MPTAEPNLAN ALHSSFEFWV DRDMEISERF NTWLVR
|
|---|
| |