| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3290 |
|---|
| Symbol | |
|---|
| ID | 4581851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 454411 |
|---|
| End bp | 456618 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639770611 |
|---|
| Product | oxidoreductase FAD/NAD(P)-binding subunit |
|---|
| Protein accession | YP_917064 |
|---|
| Protein GI | 119386009 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0369] Sulfite reductase, alpha subunit (flavoprotein)
[COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.126941 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.108188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCA TGCTGCATCG CTGGCCGGGT CTGCTGGCCC TTGCTCTCGT CATGGTCCTC
GCGATCAGCG GGGCGGCGCT CTCGGTCTTT CCAGTGGCCG AGCGGTTTTC CACGCCGCAG
GCCGAGGCCG GCCTGACCGT TGCCGATCTC GCAGAACGCA TCCGGACTGC CTATCCGGGG
GTGGAGCAGA TCCGGCGTGC GCCCTCGGGC CGGATTACTG CGTTCTGGTT CGACGACGGC
ACGCCCGGCG CGGCGGTGAT CGACCCCGCG ACCGGCAAGG GCATCGCCAG CGCCGATCCG
AACCCGGTCG AACGCTGGCT GACCAGCCTT CACCGCTCGC TGTTTCTTGG CGATGCCGGC
CGTATCGTCA TGGCCGCCGG TGCGGCGGCG ATGCTGGTCC TGTCGGTCTC CGGCGCGATG
CTGGTCGCGC GGCGCATGGG CGGCTGGCGG CGCTGGTTCA CCCCTTTGCG CGGGCCGGCA
TCGAGCCGCA TCCATACCGG GATCGCCCGC GTGGCGGTCG CGGGGCTGAT TCTGTCCTCG
GCGACCGCAC TGTGGATGGC CGCCTCGACC TTCGATCTTC TGCCGGATGG CGCCGCACCG
CCGGCCTTTC CGACCGAGGT CAGCGGCAGC ACCGGGGTCT CCCTTGCTGC GATGGAGCCG
CTCTCCGTGA TTCCTGTCAC GGAGTTGCGC GAACTGAGCT TTCCCTATCC GGGCGACGCC
ACGGACGCCT TCACCCTGAA GACGGATCGC GGCACCGGCT ATCTTGATCA GGGGACGGGT
GAGCTTCTGG CTTGGGCCGA GCTGACGATG TGGGAACGGA TATCTGAAAC CATCTACATG
CTGCATACCG GACAGGGGGC CGCATCTCTC GGCCTCGTGC TGGGTGTGAT GGCGCTCGGC
GTGCCGGCAA TGGGGGTGAG TGGTCTTGTG CTCTGGTTCG CGGGGCGGCG GTCAAGGCCG
CGTCTCCGTG GCAATCATCC TGCAAAAGGC GCTGGGACCA TCCTGCTGGT GGGCTCGGAG
GGCGGCAGCA CCTGGGGCTT CGCTGCGACG CTCCAACATG CGCTGACCAC GGTGGGCCAG
CATGTCCATG TCGCGCCGAT GTCTGGCTTC GATCCGGCGC GCTATCCGCG GGCCGAACGG
TTCATCGTCC TTTCCGCCAC CTGGGGCGAG GGACAGGCTC CCGCCACGGC GAAGGGGTTC
ATCGAACGCC TCGCGGTGCT GGACTCCGCG CCCCGCGCCC CGCTTGCCGT GCTGGGTTTC
GGTGATCGCA GCTTCCCCGC GTTCTGCGCG TTCGCCGATG AAGTCGCGCG GCTGGCTGCT
GCCAAAGGCT GGGCGCAATT GATGCCCTTC GACACGGTCG ATCGCCAGTC GCCGCAGGAT
TTCGCCCGCT GGGGCCGCGC CCTGGGGGCG GCGCTGGGGA TCGAGCTTGC GCTCGAACAT
GTGCCAACCC CGCCGGTGAC GGAGCGGCTC ACCCTGATCT CGCGCCGTGA TTACGGGGCC
GAGGTGCAGG CGCCGACCAC GATCCTGCGC TTTGCCCTAC CCGAGGCGAC GTTTTTGCAA
CGGGTGATAG CTCGGGGGTT TGGCCGGTTT CAAGCCGGTG ATCTCCTCGG CGTTCTGCCC
GAGGGTGCGG ACCTGCCGCG CTTCTACTCG CTGGCGTCCG GACGGCGCGA CGGATTCGTC
GAGATCGTGG TGCGCAAGCA TCCCGGCGGC CTCTGCTCGG GTCAGCTTCT GGCGCTGGAG
CCGGGCCAGG CGATCCGCGC CTTCGTCCGG CACAATCCGG CTTTCCATGC CGCAGCAGGA
CGCTCGCCGC TGATCCTGAT CGGCGCTGGC ACCGGCATCG GCCCGCTTGC GGGCTTCATC
CGGGGCAACA GCCGCAAGCG GCCCATCCAT CTGGCCTTCG GGATGCGCCG CCCAGACAGC
GATTTCCTGT ATCGCGACGA TCTGGCCGGC TGGCGGGTCG ATGGCCGTCT GGCGCGATTG
ACCACCGCGA ACTCGCGCGG GGCAAAGCCG CGCCATGTCC AGGACGCGCT GCGGGCCGAG
AGCGCTGAGC TGATCCGGCT GGTACACGAA GGCGCGCGCA TCATGGTCTG CGGCGGGCGC
GACATGGCCT CGGGCGTGGC CGAGGCGCTG ACCGACATCC TCGCGCCGAC GGGTCTTACC
CCGCTCGCGC TGAAAGCGGA GGGGCGCTAT GCCGAAGATA TCTACTGA
|
|---|
| Protein sequence | MIRMLHRWPG LLALALVMVL AISGAALSVF PVAERFSTPQ AEAGLTVADL AERIRTAYPG
VEQIRRAPSG RITAFWFDDG TPGAAVIDPA TGKGIASADP NPVERWLTSL HRSLFLGDAG
RIVMAAGAAA MLVLSVSGAM LVARRMGGWR RWFTPLRGPA SSRIHTGIAR VAVAGLILSS
ATALWMAAST FDLLPDGAAP PAFPTEVSGS TGVSLAAMEP LSVIPVTELR ELSFPYPGDA
TDAFTLKTDR GTGYLDQGTG ELLAWAELTM WERISETIYM LHTGQGAASL GLVLGVMALG
VPAMGVSGLV LWFAGRRSRP RLRGNHPAKG AGTILLVGSE GGSTWGFAAT LQHALTTVGQ
HVHVAPMSGF DPARYPRAER FIVLSATWGE GQAPATAKGF IERLAVLDSA PRAPLAVLGF
GDRSFPAFCA FADEVARLAA AKGWAQLMPF DTVDRQSPQD FARWGRALGA ALGIELALEH
VPTPPVTERL TLISRRDYGA EVQAPTTILR FALPEATFLQ RVIARGFGRF QAGDLLGVLP
EGADLPRFYS LASGRRDGFV EIVVRKHPGG LCSGQLLALE PGQAIRAFVR HNPAFHAAAG
RSPLILIGAG TGIGPLAGFI RGNSRKRPIH LAFGMRRPDS DFLYRDDLAG WRVDGRLARL
TTANSRGAKP RHVQDALRAE SAELIRLVHE GARIMVCGGR DMASGVAEAL TDILAPTGLT
PLALKAEGRY AEDIY
|
|---|
| |