| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2978 |
|---|
| Symbol | |
|---|
| ID | 4581544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 153212 |
|---|
| End bp | 154198 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639770304 |
|---|
| Product | putative FecR |
|---|
| Protein accession | YP_916757 |
|---|
| Protein GI | 119385702 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.651501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.224886 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGCGCA GGCAGCCTGC CCATCCGCCC AGGGATCTGT CCGACCAGGC GCTTGGCTGG
ATCGTGCGGC TCAATTCCGG CGAGGCTACG CGTGCGGATC GCGAGGCCTA TCGGTCATGG
AAGGCGCTCA GCAGGGACCA CGCCCTGGCC GCGGCCGAGG CCGAGACGCT GTGGGACTAT
GCCTCGGAGA TCGGCCGCGA TCCCGAAACC GGGCTGATCC AGCCCGGCAA GGGGCGCCGC
CGCCGCGCTT CGCGGCGCGA CGCGCTCGCC GTCCTTGCCG GGCTTGGGCT TGCGGGCGCG
GGCGGGGTCT GGCTGCACCG GCGGCAATCG CCGCTGCCGG ACCATGCGAC CGGGCTGGCG
CAGACGCGCA CGGTCGTGCT GCCGGACGGG TCGCGGGTGA CGCTGAACGC GATGTCGGCC
ATCGGCGTGG ATTATTCGCC GCAGGCGCGG CAGGTGGTCC TGATCGAGGG CCAGGTCTAT
TTCGAGGTCG CGGCCGATCC CTCGCGCCCC TTCGAGGTGC GCGCAGGCGA GATCGGCGTG
CTGGCGCTTG GCACGGCCTT CGACGTGGAC CGCACCCTGC CCGGCCATGC CCTGGCGGTC
AGCGTGGCCC GGCATTCGGT CAGCGTCCGC CGCCTGGACG ATGCGGAGCC CCGGCAGAGC
CCGACCATCG TCCGCGAGGG CGAAAGGCTG GTGATTCCGT CCGCCGGTCC CGTAGGGGCG
CCGGTCCCAC AGGACGGCTC GGCCGTGGCC GCCTGGCGCG ACGGCATCCA TGTCGCCGAG
AACCGCCGGC TGGAGGAGGT CATCGCGGCC TTCCGGCCCT ATCATCGCGG CTGGATCGTG
ATCCGCGGCG AGAGGCTGAA GGCACTGCGG GTCAATGCCG TGCTGGACCT TCGCACGCCC
GAGACCTCGC TGGCCGCGCT GGAGGGCGGA TTGCCGATCC GGGTCTGCGT GGTTTCAAGA
TACCTTACCG TGATAACAGA GCCCTAG
|
|---|
| Protein sequence | MERRQPAHPP RDLSDQALGW IVRLNSGEAT RADREAYRSW KALSRDHALA AAEAETLWDY
ASEIGRDPET GLIQPGKGRR RRASRRDALA VLAGLGLAGA GGVWLHRRQS PLPDHATGLA
QTRTVVLPDG SRVTLNAMSA IGVDYSPQAR QVVLIEGQVY FEVAADPSRP FEVRAGEIGV
LALGTAFDVD RTLPGHALAV SVARHSVSVR RLDDAEPRQS PTIVREGERL VIPSAGPVGA
PVPQDGSAVA AWRDGIHVAE NRRLEEVIAA FRPYHRGWIV IRGERLKALR VNAVLDLRTP
ETSLAALEGG LPIRVCVVSR YLTVITEP
|
|---|
| |