| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2037 |
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| Symbol | |
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| ID | 4580421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 2045228 |
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| End bp | 2046661 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639769366 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_915825 |
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| Protein GI | 119384769 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0566594 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATC CCAACCAGCT TGGCCGCGCG CCGGTCGAAA GAATGCCCGC CCAGCCGGCC
GGCAAGCCCG CCGGGCACCC GCCGCATTTC CACCCCCAGC CGCTCCAGTC CACCACGGCA
CAACCCGCAC CTTCGCCTCA GCGCCCCGAA TGGTCGGCGC GCGGTCCGGT CATCCTGGGG
CTCGTGGCGA TGCTGGTTCT GATCGGCGGC TTCGGGCTCT GGTCGCTGAC CGCGCGCATC
TCGGGCGCCG TCGTCGCCTC CGGCCAGGTC GAGGTCGAGC AGCGCCGCCA GGTCGTGCAG
CATCCCGATG GCGGGGTCGT GGCCGAGATC CTGATTCATG ACGGCGAAAG CGTGACGGCG
GGCCAGCCGC TGATCCGGCT GGACGGCGCG CTTCTGAACA CGGAACTCGC CATCGTCGAG
GGGCAGTATT TCGAGATCCT CGCCCGCCGC GGCCGGCTCG AGGCCGAGCG CGCCGACGGC
AAGGAAATCG CCTTCCCGCA GGAACTGATC AAGGCCGCCT CAAGCCGCCC CGAGCTTCAG
GCGCTGGTGG ACGGCCAGTC CAGCCTGTTC CTGGCCCGGC TCGACACGCT CGAACAATCG
CTCGGCCAGT TGGCCAAGCA GGCCGAACAG GTGCAATCCC AGATCGGCGG CGTCGATGCG
CAGACGCGGG CGCTGGAGCA GCAGCGCGAG TTCATCTCGC AGGAGCTGCG CGACCAGCGG
TCGCTTCTGG AAAAGGGGCT GGCCCAGGCG CCGCGCGTGC TGGCGCTGGA GCGCGAGGCG
GCGCGGCTCG ACGGACTTCT GGGCGAGGCG ACGGCATCCC GCGCCCGCGC CGTGACGCAA
CTGGCCGAAA TCGACCTGTC GCGGCTGGAA AAGACCGCGA CCCGCCGCGA AGCCGCCGAA
ACCGAGCTGC GCGAACTGGG CTATCGCGAG CTGGAGCTGG CCGAGCGCCG CCGTTCACTG
ATCGAACGCA TCACCCGGCT CGAAATCCGC GCCCCGGTCT CGGGCGTGGT CCAGGAATTG
CAGATCACCA CGCCGCGCTC GGTGATTCGC CCGGCCGATC CGATCATGTT CATCATCCCC
CAGGACCGGC CGCTGGTGGT CGCCGCCCGC ATCGCCACCA TCAATATCGA CGAGGTTCAC
CCCGGGCAGG AGGTGGTGCT GCGCTTCTCG TCCTTCTCGT CGCGCACCAC GCCGGAAATC
GACGGAGTGC TCAGCCGCGT CTCGCCCGAT ACGCTGATCG ACCAGGCCAC GCATGCACCC
TATTACCGGG CCGAAGTGAC GATTCCCCCC GCCGAGGTCG AAAAGCTCAA GGGGTTGGAC
CTGGTGCCCG GCATGCCGGT CGAAGTCTAT GTCCAGACCG GCCAGCGCAG CCCGATGGCC
TATCTGGTCA AGCCGCTCTC GGATTATTTC ACCCGCGCCT TCCGCGAGGA TTGA
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| Protein sequence | MTDPNQLGRA PVERMPAQPA GKPAGHPPHF HPQPLQSTTA QPAPSPQRPE WSARGPVILG
LVAMLVLIGG FGLWSLTARI SGAVVASGQV EVEQRRQVVQ HPDGGVVAEI LIHDGESVTA
GQPLIRLDGA LLNTELAIVE GQYFEILARR GRLEAERADG KEIAFPQELI KAASSRPELQ
ALVDGQSSLF LARLDTLEQS LGQLAKQAEQ VQSQIGGVDA QTRALEQQRE FISQELRDQR
SLLEKGLAQA PRVLALEREA ARLDGLLGEA TASRARAVTQ LAEIDLSRLE KTATRREAAE
TELRELGYRE LELAERRRSL IERITRLEIR APVSGVVQEL QITTPRSVIR PADPIMFIIP
QDRPLVVAAR IATINIDEVH PGQEVVLRFS SFSSRTTPEI DGVLSRVSPD TLIDQATHAP
YYRAEVTIPP AEVEKLKGLD LVPGMPVEVY VQTGQRSPMA YLVKPLSDYF TRAFRED
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